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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.412530 (15 seq.)
>W1711352259
MDDB01000002
Bacillota
Moorella thermoacetica [MDDB]
338448
338522
+
Val
GAC
[ENA]
¡û
>W1711352309
MDDC01000002
Bacillota
Moorella thermoacetica [MDDC]
63754
63828
+
Val
GAC
[ENA]
¡û
>W1711352362
MDDD01000003
Bacillota
Moorella thermoacetica [MDDD]
110424
110498
+
Val
GAC
[ENA]
¡û
>W1711352403
MDDE01000001
Bacillota
Moorella thermoacetica [MDDE]
374133
374207
+
Val
GAC
[ENA]
¡û
>W1711428534
MIHH01000003
Bacillota
Moorella thermoacetica [MIHH]
121290
121364
+
Val
GAC
[ENA]
¡û
>W1711428594
MIIF01000007
Bacillota
Moorella thermoacetica [MIIF]
66220
66294
+
Val
GAC
[ENA]
¡û
>C171055210
CP017019
Bacillota
Moorella thermoacetica DSM 103132 [CP017019]
1992696
1992622
-
Val
GAC
-
¡û
>C171058975
CP017237
Bacillota
Moorella thermoacetica DSM 103284 [CP017237]
1773679
1773605
-
Val
GAC
-
¡û
>C014193
CP000232
Bacillota
Moorella thermoacetica [CP000232]
1816407
1816333
-
Val
GAC
[Ensembl]
¡û
>W141229783
BARR01000006
Bacillota
Moorella thermoacetica Y72 [BARR]
76648
76574
-
Val
GAC
[ENA]
¡û
>WENV170676426
LDZR01002631
[LDZR] terrestrial metagenome; oil reservoir sample K2
207
281
+
Val
GAC
[ENA]
¢þ
>W09100931
AADT03000013
Bacillota
Moorella thermoacetica ATCC 39073 [AADT]
1882
1808
-
Val
GAC
[ENA]
¡û
>C191073451
CP031054
Bacillota
Moorella thermoacetica 39073-HH [CP031054]
1832840
1832766
-
Val
GAC
-
¡û
>C151094379
CP012369
Bacillota
Moorella thermoacetica DSM 521 [CP012369]
1710917
1710843
-
Val
GAC
-
¡û
>C151094430
CP012370
Bacillota
Moorella thermoacetica DSM 2955 [CP012370]
1810444
1810370
-
Val
GAC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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