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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.412798 (99 seq.)
>W1710785113
LJHO01000016
Alphaproteobacteria
Novosphingobium sp. AAP1 [LJHO]
50513
50440
-
Gln
CTG
[ENA]
¡û
>W131104484
APCQ01000695
Alphaproteobacteria
Novosphingobium sp. B-7 [APCQ]
16891
16818
-
Gln
CTG
[ENA]
¡û
>W1711125707
LUNP01000009
Alphaproteobacteria
Erythrobacter sp. REDSEA-S22_B4 [LUNP]
457967
457894
-
Gln
CTG
[ENA]
¡û
>W1711125746
LUNQ01000006
Alphaproteobacteria
Erythrobacter sp. REDSEA-S28_B2 [LUNQ]
457862
457789
-
Gln
CTG
[ENA]
¡û
>W1711125757
LUNR01000001
Alphaproteobacteria
Erythrobacter sp. REDSEA-S34_B3 [LUNR]
537999
537926
-
Gln
CTG
[ENA]
¡û
>W1711125838
LUNS01000097
Alphaproteobacteria
Erythrobacter sp. REDSEA-S36_B6 [LUNS]
26681
26754
+
Gln
CTG
[ENA]
¡û
>W1711125853
LUNT01000033
Alphaproteobacteria
Erythrobacter sp. REDSEA-S37_B3 [LUNT]
26710
26783
+
Gln
CTG
[ENA]
¡û
>W1711125942
LUNV01000012
Alphaproteobacteria
Erythrobacter sp. REDSEA-S41_B1 [LUNV]
93168
93095
-
Gln
CTG
[ENA]
¡û
>W1711125991
LUNW01000008
Alphaproteobacteria
Erythrobacter sp. REDSEA-S42_B5 [LUNW]
457507
457434
-
Gln
CTG
[ENA]
¡û
>W1711126024
LUNX01000011
Alphaproteobacteria
Erythrobacter sp. REDSEA-S43_B2 [LUNX]
169494
169421
-
Gln
CTG
[ENA]
¡û
>W1711176171
LWFF01000061
Alphaproteobacteria
Erythrobacter sp. HI0063 [LWFF]
28706
28633
-
Gln
CTG
[ENA]
¡û
>W1711253270
LYPP01000001
Alphaproteobacteria
Croceicoccus marinus [LYPP]
41104
41177
+
Gln
CTG
[ENA]
¡û
>W1711292847
LZYB01000006
Alphaproteobacteria
Erythrobacter dokdonensis DSW-74 [LZYB]
177739
177812
+
Gln
CTG
[ENA]
¡û
>W1711434803
MINO01000005
Alphaproteobacteria
Sphingobium phenoxybenzoativorans [MINO]
10506
10433
-
Gln
CTG
[ENA]
¡û
>W1711437783
MIPT01000001
Alphaproteobacteria
Sphingomonas haloaromaticamans [MIPT]
4434886
4434959
+
Gln
CTG
[ENA]
¡û
>W1711506364
MKWI01000018
Alphaproteobacteria
Sphingobium sp. 66-54 [MKWI]
103797
103870
+
Gln
CTG
[ENA]
¡û
>W1711766354
MUYH01000012
Alphaproteobacteria
Erythrobacter sanguineus [MUYH]
19923
19850
-
Gln
CTG
[ENA]
¡û
>C171096138
CP019602
Alphaproteobacteria
Croceicoccus marinus E4A9 [CP019602]
41104
41177
+
Gln
CTG
-
¡û
>WENV180020620
FTCZ01007501
[FTCZ] metagenome; soil
2700
2773
+
Gln
CTG
[ENA]
¢þ
>WENV180292293
OBIV01385672
[OBIV] soil metagenome; Clay
305
378
+
Gln
CTG
[ENA]
¢þ
>WENV180298803
OBJA01630429
[OBJA] soil metagenome; sediment, water from around vicinity
34
107
+
Gln
CTG
[ENA]
¢þ
>WENV180308583
OBJR01061646
[OBJR] soil metagenome; soil
314
241
-
Gln
CTG
[ENA]
¢þ
>WENV180399055
OBQE01031968
[OBQE] marine metagenome; ENVO.00002150
286
213
-
Gln
CTG
[ENA]
¢þ
>WENV180690973
OCZS010042827
[OCZS] soil metagenome; soil
777
704
-
Gln
CTG
[ENA]
¢þ
>WENV181168454
OEIU01372146
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
275
202
-
Gln
CTG
[ENA]
¢þ
>WENV181184430
OEKC01000224
[OEKC] metagenome; 1998
5322
5395
+
Gln
CTG
[ENA]
¢þ
>WENV181234603
OFEU01000553
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
9801
9728
-
Gln
CTG
[ENA]
¢þ
>W141230389
BASZ01000005
Alphaproteobacteria
Caenibius tardaugens NBRC 16725 [BASZ]
144150
144223
+
Gln
CTG
[ENA]
¡û
>WENV183665255
ORJL010452458
[ORJL] groundwater metagenome; groundwater
642
715
+
Gln
CTG
[ENA]
¢þ
>WENV183679376
ORMF010053952
[ORMF] groundwater metagenome; groundwater
396
469
+
Gln
CTG
[ENA]
¢þ
>WENV183724417
PJQE01012722
[PJQE] biofilm metagenome; untreated reverse osmosis biofouled membrane
1236
1163
-
Gln
CTG
[ENA]
¢þ
>WENV183730370
PJTS01000001
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
404340
404413
+
Gln
CTG
[ENA]
¢þ
>WENV183731498
PJTT01000009
[PJTT] soil metagenome; Soil (2) enriched on wood chips
453203
453130
-
Gln
CTG
[ENA]
¢þ
>WENV183731553
PJTT01000020
[PJTT] soil metagenome; Soil (2) enriched on wood chips
161131
161058
-
Gln
CTG
[ENA]
¢þ
>WENV183732985
PJTY01000012
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
139671
139598
-
Gln
CTG
[ENA]
¢þ
>WENV183733999
PJTZ01000015
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
139671
139598
-
Gln
CTG
[ENA]
¢þ
>WENV183738710
PJUE01000120
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
59088
59161
+
Gln
CTG
[ENA]
¢þ
>WENV183746528
POYD01052501
[POYD] biofilm metagenome; PVC pipe from biofilm reactor
1
74
+
Gln
CTG
[ENA]
¢þ
>WENV183749517
PPFU01178528
[PPFU] hypolithon metagenome; Antarctic Hypolithon
364
291
-
Gln
CTG
[ENA]
¢þ
>WENV170003437
AGTN01333537
[AGTN] bioreactor metagenome; poplar biomass
197
124
-
Gln
CTG
[ENA]
¢þ
>WENV170004073
AGTN01552609
[AGTN] bioreactor metagenome; poplar biomass
284
357
+
Gln
CTG
[ENA]
¢þ
>WENV170177167
CEOS01211122
[CEOS] marine metagenome genome assembly TARA_056_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
212
139
-
Gln
CTG
[ENA]
¢þ
>WENV170727359
LULE01000004
[LULE] marine metagenome; Red Sea water column Station 192 - depth 10m
537969
537896
-
Gln
CTG
[ENA]
¢þ
>WENV170728694
LULF01000180
[LULF] marine metagenome; Red Sea water column Station 169 - depth 500m
4720
4647
-
Gln
CTG
[ENA]
¢þ
>WENV170731344
LULI01000076
[LULI] marine metagenome; Red Sea water column Station 169 - depth 50m
26681
26754
+
Gln
CTG
[ENA]
¢þ
>WENV170733684
LULK01000003
[LULK] marine metagenome; Red Sea water column Station 169 - depth 10m
457962
457889
-
Gln
CTG
[ENA]
¢þ
>WENV170735670
LULL01007655
[LULL] marine metagenome; Red Sea water column Station 149 - depth 500m
1622
1695
+
Gln
CTG
[ENA]
¢þ
>WENV170737180
LULN01004887
[LULN] marine metagenome; Red Sea water column Station 149 - depth 100m
476
549
+
Gln
CTG
[ENA]
¢þ
>WENV170737381
LULO01000005
[LULO] marine metagenome; Red Sea water column Station 149 - depth 50m
26916
26989
+
Gln
CTG
[ENA]
¢þ
>WENV170743400
LULW01000002
[LULW] marine metagenome; Red Sea water column Station 108 - depth 10m
457967
457894
-
Gln
CTG
[ENA]
¢þ
>WENV170758828
LUMS01000017
[LUMS] marine metagenome; Red Sea water column Station 192 - depth 25m
93168
93095
-
Gln
CTG
[ENA]
¢þ
>WENV170759557
LUMT01000007
[LUMT] marine metagenome; Red Sea water column Station 192 - depth 50m
457507
457434
-
Gln
CTG
[ENA]
¢þ
>WENV170760725
LUMU01000007
[LUMU] marine metagenome; Red Sea water column Station 192 - depth 100m
169494
169421
-
Gln
CTG
[ENA]
¢þ
>WENV170761552
LUMV01001342
[LUMV] marine metagenome; Red Sea water column Station 192 - depth 200m
2180
2253
+
Gln
CTG
[ENA]
¢þ
>WENV170761887
LUMW01000053
[LUMW] marine metagenome; Red Sea water column Station 192 - depth 500m
1848
1921
+
Gln
CTG
[ENA]
¢þ
>WENV171003494
NNBU01000197
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
16841
16768
-
Gln
CTG
[ENA]
¢þ
>WENV171003932
NNBV01004676
[NNBV] plant metagenome; symbiotic tissue sample KVS11
181589
181662
+
Gln
CTG
[ENA]
¢þ
>C191002581
AP018498
Alphaproteobacteria
Altererythrobacter sp. B11 [AP018498]
3793140
3793067
-
Gln
CTG
-
¡û
>C191004244
AP018711
Alphaproteobacteria
Sphingosinicella microcystinivorans B9 [AP018711]
2972368
2972441
+
Gln
CTG
-
¡û
>C191121061
CP034179
Alphaproteobacteria
Caenibius tardaugens NBRC 16725 [CP034179]
2565589
2565662
+
Gln
CTG
-
¡û
>C191155737
CP037948
Alphaproteobacteria
Qipengyuania sediminis CGMCC 1.12928 [CP037948]
95243
95316
+
Gln
CTG
-
¡û
>W141564478
JIAU01000006
Alphaproteobacteria
Sphingomonas sp. URHD0057 [JIAU]
329897
329970
+
Gln
CTG
[ENA]
¡û
>W141820324
JQMU01000001
Alphaproteobacteria
Porphyrobacter sp. HL-46 [JQMU]
877681
877608
-
Gln
CTG
[ENA]
¡û
>C141006107
CP006644
Alphaproteobacteria
Sphingomonas sanxanigenens DSM 19645 = NX02 [CP006644]
5495555
5495628
+
Gln
CTG
[Ensembl]
¡û
>W1910548718
FZOS01000008
Alphaproteobacteria
Sphingomonas laterariae LNB2 [FZOS]
25681
25754
+
Gln
CTG
[ENA]
¡û
>W1910822162
MWMO01000011
Alphaproteobacteria
Novosphingobium sp. PC22D [MWMO]
42524
42451
-
Gln
CTG
[ENA]
¡û
>W1911139255
NOXT01000050
Alphaproteobacteria
Sandarakinorhabdus cyanobacteriorum TH057 [NOXT]
8458
8531
+
Gln
CTG
[ENA]
¡û
>W1911767933
QXFK01000019
Alphaproteobacteria
Pelagerythrobacter aerophilus Ery1 [QXFK]
330848
330775
-
Gln
CTG
[ENA]
¡û
>W1911802713
QYUM01000004
Alphaproteobacteria
Sphingomonas cavernae K2R01-6 [QYUM]
782921
782994
+
Gln
CTG
[ENA]
¡û
>W1911823511
QZVQ01000006
Alphaproteobacteria
Croceibacterium ferulae SX2RGS8 [QZVQ]
255401
255474
+
Gln
CTG
[ENA]
¡û
>W1810109400
PHHF01000047
Alphaproteobacteria
Sphingomonas fennica K101 [PHHF]
22891
22818
-
Gln
CTG
[ENA]
¡û
>SRA1003018
SRR002326.153200
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
66
139
+
Gln
CTG
[SRA]
>SRA1003855
SRR002327.235256
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
107
34
-
Gln
CTG
[SRA]
>W1810463748
PZZU01000022
Alphaproteobacteria
Novosphingobium sp. GV064 [PZZU]
5724
5797
+
Gln
CTG
[ENA]
¡û
>W1810477339
QAOS01000022
Alphaproteobacteria
Novosphingobium sp. GV055 [QAOS]
5724
5797
+
Gln
CTG
[ENA]
¡û
>W1810513893
QBUA01000022
Alphaproteobacteria
Novosphingobium sp. GV061 [QBUA]
5724
5797
+
Gln
CTG
[ENA]
¡û
>W1810514106
QBUE01000022
Alphaproteobacteria
Novosphingobium sp. GV079 [QBUE]
5724
5797
+
Gln
CTG
[ENA]
¡û
>W1810514315
QBUI01000022
Alphaproteobacteria
Novosphingobium sp. GV027 [QBUI]
5724
5797
+
Gln
CTG
[ENA]
¡û
>W1810677143
QKMM01000016
Alphaproteobacteria
Novosphingobium sp. B3058 49 [QKMM]
58676
58603
-
Gln
CTG
[ENA]
¡û
>W1510019430
BBWU01000045
Alphaproteobacteria
Sphingomonas changbaiensis NBRC 104936 [BBWU]
112138
112211
+
Gln
CTG
[ENA]
¡û
>W1511352569
JROH01000023
Alphaproteobacteria
Sphingomonas sp. 37zxx [JROH]
743
670
-
Gln
CTG
[ENA]
¡û
>W1610071172
BCTW01000002
Alphaproteobacteria
Novosphingobium lentum NBRC 107847 [BCTW]
33608
33535
-
Gln
CTG
[ENA]
¡û
>W1610076579
BCYV01000024
Alphaproteobacteria
Novosphingobium capsulatum NBRC 12533 [BCYV]
50469
50396
-
Gln
CTG
[ENA]
¡û
>C131011849
CP004036
Alphaproteobacteria
Sphingomonas sp. MM-1 [CP004036]
1940867
1940940
+
Gln
CTG
[Ensembl]
¡û
>W1610648919
LJHO01000016
Alphaproteobacteria
Novosphingobium sp. AAP1 [LJHO]
50513
50440
-
Gln
CTG
[ENA]
¡û
>W1610936640
LUNP01000009
Alphaproteobacteria
Erythrobacter sp. REDSEA-S22_B4 [LUNP]
457967
457894
-
Gln
CTG
[ENA]
¡û
>W1610936679
LUNQ01000006
Alphaproteobacteria
Erythrobacter sp. REDSEA-S28_B2 [LUNQ]
457862
457789
-
Gln
CTG
[ENA]
¡û
>W1610936690
LUNR01000001
Alphaproteobacteria
Erythrobacter sp. REDSEA-S34_B3 [LUNR]
537999
537926
-
Gln
CTG
[ENA]
¡û
>W1610936771
LUNS01000097
Alphaproteobacteria
Erythrobacter sp. REDSEA-S36_B6 [LUNS]
26681
26754
+
Gln
CTG
[ENA]
¡û
>W1610936786
LUNT01000033
Alphaproteobacteria
Erythrobacter sp. REDSEA-S37_B3 [LUNT]
26710
26783
+
Gln
CTG
[ENA]
¡û
>W1610936875
LUNV01000012
Alphaproteobacteria
Erythrobacter sp. REDSEA-S41_B1 [LUNV]
93168
93095
-
Gln
CTG
[ENA]
¡û
>W1610936924
LUNW01000008
Alphaproteobacteria
Erythrobacter sp. REDSEA-S42_B5 [LUNW]
457507
457434
-
Gln
CTG
[ENA]
¡û
>W1610936957
LUNX01000011
Alphaproteobacteria
Erythrobacter sp. REDSEA-S43_B2 [LUNX]
169494
169421
-
Gln
CTG
[ENA]
¡û
>W1610984484
LWFF01000061
Alphaproteobacteria
Erythrobacter sp. HI0063 [LWFF]
28706
28633
-
Gln
CTG
[ENA]
¡û
>W1611017807
LYPP01000001
Alphaproteobacteria
Croceicoccus marinus [LYPP]
41104
41177
+
Gln
CTG
[ENA]
¡û
>W1611050063
LZYB01000006
Alphaproteobacteria
Erythrobacter dokdonensis DSW-74 [LZYB]
177739
177812
+
Gln
CTG
[ENA]
¡û
>W1710068537
BCTW01000002
Alphaproteobacteria
Novosphingobium lentum NBRC 107847 [BCTW]
33608
33535
-
Gln
CTG
[ENA]
¡û
>W1710074268
BCYV01000024
Alphaproteobacteria
Novosphingobium capsulatum NBRC 12533 [BCYV]
50469
50396
-
Gln
CTG
[ENA]
¡û
>W1710593228
FRDF01000013
Alphaproteobacteria
Erythrobacter sanguineus [FRDF]
19208
19135
-
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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