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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.412802 (21 seq.)
>W1710996452
LQBL01000003
Actinomycetota
Serinicoccus chungangensis [LQBL]
188552
188625
+
Gly
CCC
[ENA]
¡û
>W131161621
AQXW01000004
Actinomycetota
Demetria terragena DSM 11295 [AQXW]
2264226
2264153
-
Gly
CCC
[ENA]
¡û
>W131217040
ATWJ01000011
Actinomycetota
Ornithinimicrobium pekingense DSM 21552 [ATWJ]
248032
248103
+
Gly
CCC
[ENA]
¡û
>W131217183
ATWM01000011
Actinomycetota
Serinicoccus marinus DSM 15273 [ATWM]
22553
22626
+
Gly
CCC
[ENA]
¡û
>W1711491929
MKJZ01000003
Actinomycetota
Serinicoccus sp. CUA-874 [MKJZ]
42955
42882
-
Gly
CCC
[ENA]
¡û
>W1711491968
MKKA01000002
Actinomycetota
Ornithinimicrobium sp. CNJ-824 [MKKA]
91458
91531
+
Gly
CCC
[ENA]
¡û
>W1711492235
MKKF01000022
Actinomycetota
Serinicoccus sp. CNJ-927 [MKKF]
212313
212240
-
Gly
CCC
[ENA]
¡û
>C171034678
CP014989
Actinomycetota
Serinicoccus hydrothermalis JLT9 [CP014989]
2733461
2733388
-
Gly
CCC
-
¡û
>WENV183749247
PPFU01141585
[PPFU] hypolithon metagenome; Antarctic Hypolithon
1
74
+
Gly
CCC
[ENA]
¢þ
>C181197158
CP031229
Actinomycetota
Ornithinimicrobium avium AMA3305 [CP031229]
2044918
2044991
+
Gly
CCC
-
¡û
>C191150916
CP036403
Actinomycetota
Ornithinimicrobium sp. HY006 [CP036403]
3568231
3568302
+
Gly
CCC
-
¡û
>C191158382
CP038213
Actinomycetota
Ornithinimicrobium flavum CPCC 203535 [CP038213]
3278529
3278601
+
Gly
CCC
-
¡û
>C191183675
CP040887
Actinomycetota
Serinicoccus chungangensis CCUG 59777 [CP040887]
2899144
2899217
+
Gly
CCC
-
¡û
>W1911495860
OBQK01000009
Actinomycetota
Ornithinimicrobium cerasi USBA17B2 [OBQK]
26822
26894
+
Gly
CCC
[ENA]
¡û
>W1911817431
QZMN01000008
Actinomycetota
Ornithinimicrobium cerasi CPCC 203383 [QZMN]
125989
126061
+
Gly
CCC
[ENA]
¡û
>W1810535034
QDDJ01000006
Actinomycetota
Ornithinimicrobium cavernae KCTC 49018 [QDDJ]
225115
225042
-
Gly
CCC
[ENA]
¡û
>W1810697601
QLVD01000026
Actinomycetota
Ornithinimicrobium murale DSM 22056 [QLVD]
47530
47603
+
Gly
CCC
[ENA]
¡û
>C151077130
CP011112
Actinomycetota
Luteipulveratus mongoliensis MN07-A0370 [CP011112]
5203931
5204004
+
Gly
CCC
-
¡û
>W1511568141
LAIR01000002
Actinomycetota
Luteipulveratus halotolerans C296001 [LAIR]
37832
37759
-
Gly
CCC
[ENA]
¡û
>W11177048
AFYF01000102
Actinomycetota
Serinicoccus profundi MCCC 1A05965 [AFYF]
4476
4403
-
Gly
CCC
[ENA]
¡û
>W1610851109
LQBL01000003
Actinomycetota
Serinicoccus chungangensis [LQBL]
188552
188625
+
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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