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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.412812 (38 seq.)
>W131053697
ANAH01000038
Myxococcota
Cystobacter fuscus DSM 2262 [ANAH]
4581
4652
+
Gln
CTG
[ENA]
¡û
>W131086615
AOBT01000008
Myxococcota
Myxococcus xanthus DZF1 [AOBT]
171711
171782
+
Gln
CTG
[ENA]
¡û
>W1711625259
MPIN01000004
Myxococcota
Cystobacter ferrugineus [MPIN]
840099
840028
-
Gln
CTG
[ENA]
¡û
>W1711628640
MPOI01000011
Myxococcota
Archangium sp. Cb G35 [MPOI]
423722
423793
+
Gln
CTG
[ENA]
¡û
>C014521
CP000113
Myxococcota
Myxococcus xanthus DK 1622 [CP000113]
3121002
3120932
-
Gln
CTG
[Ensembl]
¡û
>w012160
AAMD01000122
Myxococcota
Stigmatella aurantiaca DW4/3-1 [AAMD]
16448
16373
-
Gln
CTG
[ENA]
¡û
>WENV180016099
FSUC01000170
[FSUC] metagenome; soil
3489
3418
-
Gln
CTG
[ENA]
¢þ
>WENV170558308
CXWL01062758
[CXWL] groundwater metagenome; biofilm material
1035
964
-
Gln
CTG
[ENA]
¢þ
>C181057889
CP022098
Myxococcota
Cystobacter fuscus DSM 52655 [CP022098]
3701448
3701377
-
Gln
CTG
-
¡û
>C181059806
CP022163
Myxococcota
Melittangium boletus DSM 14713 [CP022163]
656408
656479
+
Gln
CTG
-
¡û
>C181060662
CP022203
Myxococcota
Corallococcus macrosporus DSM 14697 [CP022203]
3118997
3118926
-
Gln
CTG
-
¡û
>C191013158
CP017169
Myxococcota
Myxococcus xanthus GH3.5.6c2 [CP017169]
3136745
3136674
-
Gln
CTG
-
¡û
>C191013223
CP017170
Myxococcota
Myxococcus xanthus GH5.1.9c20 [CP017170]
3056006
3055935
-
Gln
CTG
-
¡û
>C191013290
CP017171
Myxococcota
Myxococcus xanthus KF3.2.8c11 [CP017171]
2907935
2907864
-
Gln
CTG
-
¡û
>C191013354
CP017172
Myxococcota
Myxococcus xanthus KF4.3.9c1 [CP017172]
3063305
3063234
-
Gln
CTG
-
¡û
>C191013419
CP017173
Myxococcota
Myxococcus xanthus MC3.3.5c16 [CP017173]
3092622
3092551
-
Gln
CTG
-
¡û
>C191013484
CP017174
Myxococcota
Myxococcus xanthus MC3.5.9c15 [CP017174]
3092622
3092551
-
Gln
CTG
-
¡û
>C191128666
CP034669
Myxococcota
Corallococcus coralloides B035 [CP034669]
6451786
6451857
+
Gln
CTG
-
¡û
>W141695198
JMCB01000013
Myxococcota
Hyalangium minutum [JMCB]
144598
144527
-
Gln
CTG
[ENA]
¡û
>W141695262
JMCC01000067
Myxococcota
Enhygromyxa salina [JMCC]
44251
44322
+
Gln
CTG
[ENA]
¡û
>W141806660
JPMI01000220
Myxococcota
Archangium violaceum Cb vi76 [JPMI]
140821
140748
-
Gln
CTG
[ENA]
¡û
>W1911701589
QNUN01000002
Myxococcota
Corallococcus sp. H22C18031201 [QNUN]
88098
88169
+
Gln
CTG
[ENA]
¡û
>W1810452238
PZOX01000022
Myxococcota
Vitiosangium sp. GDMCC 1.1324 [PZOX]
56040
56111
+
Gln
CTG
[ENA]
¡û
>W1810884665
QUMU01000002
Myxococcota
Archangium gephyra DSM 2261 [QUMU]
652831
652903
+
Gln
CTG
[ENA]
¡û
>C151008205
CP006003
Myxococcota
Myxococcus fulvus 124B02 [CP006003]
4191642
4191571
-
Gln
CTG
[Ensembl]
¡û
>C151083575
CP011509
Myxococcota
Archangium gephyra DSM 2261 [CP011509]
8897918
8897990
+
Gln
CTG
[Ensembl]
¡û
>C151091009
CP012109
Myxococcota
Myxococcus hansupus mixupus [CP012109]
5447762
5447833
+
Gln
CTG
[Ensembl]
¡û
>C11114351
CP002830
Myxococcota
Corallococcus macrosporus HW-1 [CP002830]
4985600
4985529
-
Gln
CTG
[Ensembl]
¡û
>C11119143
CP002271
Myxococcota
Stigmatella aurantiaca DW4/3-1 [CP002271]
4122562
4122491
-
Gln
CTG
[Ensembl]
¡û
>C121012066
CP003389
Myxococcota
Corallococcus coralloides DSM 2259 [CP003389]
6757609
6757680
+
Gln
CTG
[Ensembl]
¡û
>W121102853
AKXT01000010
Myxococcota
Myxococcus hansupus DSM 436 [AKXT]
5233
5162
-
Gln
CTG
[ENA]
¡û
>W121103129
AKYI01001171
Myxococcota
Myxococcus xanthus DZ2 [AKYI]
4908
4837
-
Gln
CTG
[ENA]
¡û
>C131011694
CP004025
Myxococcota
Myxococcus stipitatus DSM 14675 [CP004025]
3898077
3898006
-
Gln
CTG
[Ensembl]
¡û
>W1710513697
FNAJ01000003
Myxococcota
Myxococcus virescens [FNAJ]
180292
180363
+
Gln
CTG
[ENA]
¡û
>W1710529786
FNOH01000004
Myxococcota
Myxococcus xanthus [FNOH]
171916
171987
+
Gln
CTG
[ENA]
¡û
>W1710544118
FOAP01000010
Myxococcota
Stigmatella aurantiaca [FOAP]
155173
155102
-
Gln
CTG
[ENA]
¡û
>W1710553996
FOIB01000008
Myxococcota
Myxococcus fulvus [FOIB]
487857
487786
-
Gln
CTG
[ENA]
¡û
>W1710554341
FOIJ01000003
Myxococcota
Stigmatella erecta [FOIJ]
197094
197165
+
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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