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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.412883 (46 seq.)
>W131167460
ARDH01000005
Alphaproteobacteria
Bradyrhizobium sp. WSM4349 WSM4349 [ARDH]
65017
65090
+
Cys
GCA
[ENA]
¡û
>W1711138868
LVEM01000001
Alphaproteobacteria
Bradyrhizobium stylosanthis [LVEM]
1498688
1498615
-
Cys
GCA
[ENA]
¡û
>W1711928289
NAEX01000170
Alphaproteobacteria
Bradyrhizobium canariense [NAEX]
77829
77756
-
Cys
GCA
[ENA]
¡û
>W1711928342
NAEY01000159
Alphaproteobacteria
Bradyrhizobium canariense [NAEY]
77875
77802
-
Cys
GCA
[ENA]
¡û
>W1711928385
NAEZ01000167
Alphaproteobacteria
Bradyrhizobium canariense [NAEZ]
68674
68747
+
Cys
GCA
[ENA]
¡û
>W1711928422
NAFA01000186
Alphaproteobacteria
Bradyrhizobium canariense [NAFA]
77875
77802
-
Cys
GCA
[ENA]
¡û
>W1711928483
NAFB01000182
Alphaproteobacteria
Bradyrhizobium canariense [NAFB]
77875
77802
-
Cys
GCA
[ENA]
¡û
>W1711928515
NAFC01000158
Alphaproteobacteria
Bradyrhizobium canariense [NAFC]
73953
74026
+
Cys
GCA
[ENA]
¡û
>W1711928559
NAFD01000168
Alphaproteobacteria
Bradyrhizobium canariense [NAFD]
77829
77756
-
Cys
GCA
[ENA]
¡û
>W1711928605
NAFE01000199
Alphaproteobacteria
Bradyrhizobium canariense [NAFE]
77955
77882
-
Cys
GCA
[ENA]
¡û
>W1711928654
NAFF01000084
Alphaproteobacteria
Bradyrhizobium canariense [NAFF]
77955
77882
-
Cys
GCA
[ENA]
¡û
>W1711928702
NAFG01000154
Alphaproteobacteria
Bradyrhizobium canariense [NAFG]
77955
77882
-
Cys
GCA
[ENA]
¡û
>W1711928751
NAFH01000155
Alphaproteobacteria
Bradyrhizobium canariense [NAFH]
77829
77756
-
Cys
GCA
[ENA]
¡û
>W1711928799
NAFI01000158
Alphaproteobacteria
Bradyrhizobium canariense [NAFI]
77955
77882
-
Cys
GCA
[ENA]
¡û
>W1711928868
NAFJ01000152
Alphaproteobacteria
Bradyrhizobium canariense [NAFJ]
208813
208886
+
Cys
GCA
[ENA]
¡û
>W1711928919
NAFK01000173
Alphaproteobacteria
Bradyrhizobium canariense [NAFK]
98854
98781
-
Cys
GCA
[ENA]
¡û
>W1712049622
NFUH01000338
Alphaproteobacteria
Bradyrhizobium guangdongense [NFUH]
6680
6607
-
Cys
GCA
[ENA]
¡û
>C003055
BA000040
Alphaproteobacteria
Bradyrhizobium diazoefficiens USDA 110 USDA110 [BA000040]
4936093
4936166
+
Cys
GCA
[Ensembl]
¡û
>C018892
CP000301
Alphaproteobacteria
Rhodopseudomonas palustris [CP000301]
2783459
2783532
+
Cys
GCA
[Ensembl]
¡û
>W141220415
AZXU01000002
Alphaproteobacteria
Bradyrhizobium sp. WSM1417 [AZXU]
3753959
3754032
+
Cys
GCA
[ENA]
¡û
>W141275949
JADK01000007
Alphaproteobacteria
Bradyrhizobium sp. URHA0013 [JADK]
14744
14817
+
Cys
GCA
[ENA]
¡û
>WENV170706314
LNAP01001998
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
19113
19040
-
Cys
GCA
[ENA]
¢þ
>WENV170706905
LNAP01008749
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
6446
6373
-
Cys
GCA
[ENA]
¢þ
>C181178188
CP029426
Alphaproteobacteria
Bradyrhizobium amphicarpaeae 39S1MB [CP029426]
3236365
3236438
+
Cys
GCA
-
¡û
>C181178232
CP029427
Alphaproteobacteria
Bradyrhizobium symbiodeficiens 85S1MB [CP029427]
3045118
3045191
+
Cys
GCA
-
¡û
>C181181559
CP029603
Alphaproteobacteria
Bradyrhizobium diazoefficiens XF7 [CP029603]
5161358
5161431
+
Cys
GCA
-
¡û
>C191071738
CP030053
Alphaproteobacteria
Bradyrhizobium guangzhouense CCBAU 51670 [CP030053]
3840914
3840841
-
Cys
GCA
-
¡û
>C191092025
CP032617
Alphaproteobacteria
Bradyrhizobium diazoefficiens 110spc4 [CP032617]
4871737
4871810
+
Cys
GCA
-
¡û
>C191186627
CP041090
Alphaproteobacteria
Bradyrhizobium symbiodeficiens 65S1MB [CP041090]
2315892
2315965
+
Cys
GCA
-
¡û
>W09104414
AALR01000004
Alphaproteobacteria
Rhodopseudomonas palustris BisB18 [AALR]
34351
34278
-
Cys
GCA
[ENA]
¡û
>W1910611572
LFJC01000003
Alphaproteobacteria
Bradyrhizobium nitroreducens TSA1 [LFJC]
3647651
3647578
-
Cys
GCA
[ENA]
¡û
>W1910840291
MZXW01000054
Alphaproteobacteria
Bradyrhizobium betae Opo-243 [MZXW]
220882
220809
-
Cys
GCA
[ENA]
¡û
>W1911409794
NWTE01000011
Alphaproteobacteria
Bradyrhizobium diazoefficiens Y21 [NWTE]
195906
195979
+
Cys
GCA
[ENA]
¡û
>W1810400160
PYFW01000004
Alphaproteobacteria
Bradyrhizobium sp. MOS003 [PYFW]
337987
337914
-
Cys
GCA
[ENA]
¡û
>W1810400194
PYFX01000004
Alphaproteobacteria
Bradyrhizobium sp. MOS002 [PYFX]
784097
784170
+
Cys
GCA
[ENA]
¡û
>W1511533258
JYMR01000008
Alphaproteobacteria
Bradyrhizobium sp. LTSP849 [JYMR]
179851
179778
-
Cys
GCA
[ENA]
¡û
>W1511533325
JYMS01000046
Alphaproteobacteria
Bradyrhizobium sp. LTSP857 [JYMS]
82542
82615
+
Cys
GCA
[ENA]
¡û
>C161017409
CP007569
Alphaproteobacteria
Bradyrhizobium japonicum SEMIA 5079 [CP007569]
2506745
2506672
-
Cys
GCA
[Ensembl]
¡û
>C161034227
CP011360
Alphaproteobacteria
Bradyrhizobium diazoefficiens USDA 110 [CP011360]
4255764
4255837
+
Cys
GCA
-
¡û
>C161107851
LN901633
Alphaproteobacteria
Bradyrhizobium sp. [LN901633]
7199091
7199018
-
Cys
GCA
-
¡û
>W121036197
AHLW01000001
Alphaproteobacteria
Bradyrhizobium sp. WSM471 [AHLW]
4348283
4348356
+
Cys
GCA
[ENA]
¡û
>W121036416
AHMB01000020
Alphaproteobacteria
Bradyrhizobium sp. WSM1253 [AHMB]
27633
27560
-
Cys
GCA
[ENA]
¡û
>W121065647
AJQE01000343
Alphaproteobacteria
Bradyrhizobium sp. CCBAU 43298 [AJQE]
3771
3844
+
Cys
GCA
[ENA]
¡û
>W121065831
AJQI01000327
Alphaproteobacteria
Bradyrhizobium diazoefficiens CCBAU 41267 [AJQI]
5444
5517
+
Cys
GCA
[ENA]
¡û
>W1610949876
LVEM01000001
Alphaproteobacteria
Bradyrhizobium stylosanthis [LVEM]
1498688
1498615
-
Cys
GCA
[ENA]
¡û
>W1710546028
FOBX01000012
Alphaproteobacteria
Bradyrhizobium sp. OK095 [FOBX]
155856
155783
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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