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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.412886 (132 seq.)
>W1711229992
LXZG01000100
Bacillota
Ligilactobacillus salivarius [LXZG]
70026
69956
-
Gly
CCC
[ENA]
¡û
>W1711687586
MSCR01000016
Bacillota
Ligilactobacillus salivarius [MSCR]
121550
121480
-
Gly
CCC
[ENA]
¡û
>W1711943469
NBDX01000008
Bacillota
Ligilactobacillus salivarius [NBDX]
122978
122908
-
Gly
CCC
[ENA]
¡û
>W1711943516
NBDY01000008
Bacillota
Ligilactobacillus salivarius [NBDY]
271603
271533
-
Gly
CCC
[ENA]
¡û
>W1711943551
NBDZ01000009
Bacillota
Ligilactobacillus salivarius [NBDZ]
21590
21520
-
Gly
CCC
[ENA]
¡û
>W1711943581
NBEA01000015
Bacillota
Ligilactobacillus salivarius [NBEA]
61408
61478
+
Gly
CCC
[ENA]
¡û
>W1711943632
NBEB01000036
Bacillota
Ligilactobacillus salivarius [NBEB]
16690
16620
-
Gly
CCC
[ENA]
¡û
>W1711943684
NBEC01000037
Bacillota
Ligilactobacillus salivarius [NBEC]
16690
16620
-
Gly
CCC
[ENA]
¡û
>W1711943731
NBED01000015
Bacillota
Ligilactobacillus salivarius [NBED]
28197
28127
-
Gly
CCC
[ENA]
¡û
>W1711943761
NBEE01000010
Bacillota
Ligilactobacillus salivarius [NBEE]
229067
228997
-
Gly
CCC
[ENA]
¡û
>W1711943813
NBEF01000017
Bacillota
Ligilactobacillus salivarius [NBEF]
10809
10739
-
Gly
CCC
[ENA]
¡û
>W1711943858
NBEG01000011
Bacillota
Ligilactobacillus salivarius [NBEG]
270856
270786
-
Gly
CCC
[ENA]
¡û
>W1711943903
NBEH01000010
Bacillota
Ligilactobacillus salivarius [NBEH]
21590
21520
-
Gly
CCC
[ENA]
¡û
>W1711943948
NBEI01000012
Bacillota
Ligilactobacillus salivarius [NBEI]
21590
21520
-
Gly
CCC
[ENA]
¡û
>W1711943999
NBEJ01000009
Bacillota
Ligilactobacillus salivarius [NBEJ]
156904
156834
-
Gly
CCC
[ENA]
¡û
>W1711944046
NBEK01000010
Bacillota
Ligilactobacillus salivarius [NBEK]
235328
235258
-
Gly
CCC
[ENA]
¡û
>W1711944084
NBEL01000008
Bacillota
Ligilactobacillus salivarius [NBEL]
235430
235360
-
Gly
CCC
[ENA]
¡û
>W1711944134
NBEM01000005
Bacillota
Ligilactobacillus salivarius [NBEM]
288568
288498
-
Gly
CCC
[ENA]
¡û
>W1711944191
NBEN01000006
Bacillota
Ligilactobacillus salivarius [NBEN]
244924
244854
-
Gly
CCC
[ENA]
¡û
>W1711944228
NBEO01000008
Bacillota
Ligilactobacillus salivarius [NBEO]
215722
215652
-
Gly
CCC
[ENA]
¡û
>W1711944275
NBEP01000039
Bacillota
Ligilactobacillus salivarius [NBEP]
55189
55119
-
Gly
CCC
[ENA]
¡û
>W1711944321
NBEQ01000009
Bacillota
Ligilactobacillus salivarius [NBEQ]
167412
167342
-
Gly
CCC
[ENA]
¡û
>W1711944381
NBER01000022
Bacillota
Ligilactobacillus salivarius [NBER]
78145
78075
-
Gly
CCC
[ENA]
¡û
>W1711944424
NBES01000020
Bacillota
Ligilactobacillus salivarius [NBES]
16511
16441
-
Gly
CCC
[ENA]
¡û
>W1711944466
NBET01000014
Bacillota
Ligilactobacillus salivarius [NBET]
230474
230404
-
Gly
CCC
[ENA]
¡û
>W1711944515
NBEU01000008
Bacillota
Ligilactobacillus salivarius [NBEU]
21590
21520
-
Gly
CCC
[ENA]
¡û
>W1711944557
NBEV01000018
Bacillota
Ligilactobacillus salivarius [NBEV]
73130
73060
-
Gly
CCC
[ENA]
¡û
>W1711944611
NBEW01000031
Bacillota
Ligilactobacillus salivarius [NBEW]
24760
24690
-
Gly
CCC
[ENA]
¡û
>W1711944647
NBEX01000036
Bacillota
Ligilactobacillus salivarius [NBEX]
24760
24690
-
Gly
CCC
[ENA]
¡û
>W1711944688
NBEY01000032
Bacillota
Ligilactobacillus salivarius [NBEY]
24760
24690
-
Gly
CCC
[ENA]
¡û
>W1712035975
NFHF01000004
Bacillota
Ligilactobacillus salivarius [NFHF]
24700
24630
-
Gly
CCC
[ENA]
¡û
>W1712036879
NFHV01000001
Bacillota
Ligilactobacillus salivarius [NFHV]
156863
156933
+
Gly
CCC
[ENA]
¡û
>W1712041933
NFLK01000002
Bacillota
Ligilactobacillus salivarius [NFLK]
121651
121581
-
Gly
CCC
[ENA]
¡û
>C171057140
CP017107
Bacillota
Ligilactobacillus salivarius CICC 23174 [CP017107]
1580810
1580880
+
Gly
CCC
-
¡û
>C171113764
CP020858
Bacillota
Ligilactobacillus salivarius ZLS006 [CP020858]
1094407
1094477
+
Gly
CCC
-
¡û
>C171129020
LT604074
Bacillota
Ligilactobacillus salivarius [LT604074]
1585905
1585835
-
Gly
CCC
-
¡û
>C171129751
LT630287
Bacillota
Ligilactobacillus acidipiscis ACA-DC 1533 [LT630287]
1058239
1058309
+
Gly
CCC
-
¡û
>C012735
CP000233
Bacillota
Ligilactobacillus salivarius UCC118 [CP000233]
723605
723535
-
Gly
CCC
[Ensembl]
¡û
>WENV181198246
OERD01003449
[OERD] metagenome; water of meat washing
560
630
+
Gly
CCC
[ENA]
¢þ
>WENV181428052
OGCU01001228
[OGCU] metagenome; Human gut stool
4012
4082
+
Gly
CCC
[ENA]
¢þ
>WENV181428649
OGCW01000028
[OGCW] metagenome; Human gut stool
23483
23413
-
Gly
CCC
[ENA]
¢þ
>WENV181429076
OGCX01000002
[OGCX] metagenome; Human gut stool
184291
184361
+
Gly
CCC
[ENA]
¢þ
>WENV181454377
OGED01000930
[OGED] metagenome; Human gut stool
7632
7702
+
Gly
CCC
[ENA]
¢þ
>WENV181457892
OGEJ01000017
[OGEJ] metagenome; Human gut stool
170678
170748
+
Gly
CCC
[ENA]
¢þ
>WENV181467864
OGES01000020
[OGES] metagenome; Human gut stool
65672
65742
+
Gly
CCC
[ENA]
¢þ
>WENV181483336
OGFK01002726
[OGFK] metagenome; Human gut stool
2898
2828
-
Gly
CCC
[ENA]
¢þ
>WENV181484878
OGFL01034146
[OGFL] metagenome; Human gut stool
186
116
-
Gly
CCC
[ENA]
¢þ
>WENV181494104
OGGB01000175
[OGGB] metagenome; Human gut stool
4680
4750
+
Gly
CCC
[ENA]
¢þ
>WENV181501375
OGGI01000158
[OGGI] metagenome; Human gut stool
23423
23353
-
Gly
CCC
[ENA]
¢þ
>WENV181505934
OGGM01000001
[OGGM] metagenome; Human gut stool
443295
443365
+
Gly
CCC
[ENA]
¢þ
>WENV181506699
OGGN01006219
[OGGN] metagenome; Human gut stool
442
512
+
Gly
CCC
[ENA]
¢þ
>WENV181517751
OGGZ01028919
[OGGZ] metagenome; Human gut stool
75
145
+
Gly
CCC
[ENA]
¢þ
>WENV181518745
OGHB01000171
[OGHB] metagenome; Human gut stool
32683
32753
+
Gly
CCC
[ENA]
¢þ
>WENV181525057
OGHJ01000002
[OGHJ] metagenome; Human gut stool
220586
220656
+
Gly
CCC
[ENA]
¢þ
>WENV181532505
OGHP01001371
[OGHP] metagenome; Human gut stool
1380
1310
-
Gly
CCC
[ENA]
¢þ
>WENV181537334
OGHW01006153
[OGHW] metagenome; Human gut stool
3081
3151
+
Gly
CCC
[ENA]
¢þ
>WENV181538442
OGHY01009951
[OGHY] metagenome; Human gut stool
2440
2510
+
Gly
CCC
[ENA]
¢þ
>WENV181539267
OGHZ01007778
[OGHZ] metagenome; Human gut stool
1091
1021
-
Gly
CCC
[ENA]
¢þ
>WENV181550650
OGIN01000019
[OGIN] metagenome; Human gut stool
21586
21516
-
Gly
CCC
[ENA]
¢þ
>WENV181556553
OGIV01000002
[OGIV] metagenome; Human gut stool
47065
47135
+
Gly
CCC
[ENA]
¢þ
>WENV181558189
OGIX01000007
[OGIX] metagenome; Human gut stool
78133
78203
+
Gly
CCC
[ENA]
¢þ
>WENV181570721
OGJO01000002
[OGJO] metagenome; Human gut stool
229721
229651
-
Gly
CCC
[ENA]
¢þ
>WENV181576062
OGJV01000338
[OGJV] metagenome; Human gut stool
14022
13952
-
Gly
CCC
[ENA]
¢þ
>WENV181581243
OGKA01003367
[OGKA] metagenome; Human gut stool
1820
1890
+
Gly
CCC
[ENA]
¢þ
>WENV181581936
OGKB01000096
[OGKB] metagenome; Human gut stool
24776
24706
-
Gly
CCC
[ENA]
¢þ
>WENV181587963
OGKH01000183
[OGKH] metagenome; Human gut stool
37565
37495
-
Gly
CCC
[ENA]
¢þ
>WENV181588612
OGKJ01000154
[OGKJ] metagenome; Human gut stool
24788
24858
+
Gly
CCC
[ENA]
¢þ
>WENV181589637
OGKM01000001
[OGKM] metagenome; Human gut stool
176604
176674
+
Gly
CCC
[ENA]
¢þ
>WENV181933643
OGYS01016972
[OGYS] human gut metagenome; faeces
619
549
-
Gly
CCC
[ENA]
¢þ
>WENV181993366
OHAS01000632
[OHAS] human gut metagenome; faeces
7854
7924
+
Gly
CCC
[ENA]
¢þ
>W141256140
CBVR010000014
Bacillota
Ligilactobacillus salivarius cp400 [CBVR]
8309
8379
+
Gly
CCC
[ENA]
¡û
>WENV182952690
OKVW01010529
[OKVW] human gut metagenome; human gut
985
1055
+
Gly
CCC
[ENA]
¢þ
>WENV183131839
OLOB01000064
[OLOB] human gut metagenome; faeces
67096
67166
+
Gly
CCC
[ENA]
¢þ
>WENV183179757
OLPH01014786
[OLPH] human gut metagenome; faeces
770
700
-
Gly
CCC
[ENA]
¢þ
>WENV183218026
OLQI01008271
[OLQI] human gut metagenome; faeces
1076
1146
+
Gly
CCC
[ENA]
¢þ
>WENV183407045
OMAC01000009
[OMAC] human gut metagenome; feces
159839
159909
+
Gly
CCC
[ENA]
¢þ
>WENV183427376
OMBN01000002
[OMBN] human gut metagenome; feces
159839
159909
+
Gly
CCC
[ENA]
¢þ
>WENV183428462
OMBO01000007
[OMBO] human gut metagenome; feces
137588
137658
+
Gly
CCC
[ENA]
¢þ
>WENV183472628
OMER01000003
[OMER] human gut metagenome; feces
66213
66283
+
Gly
CCC
[ENA]
¢þ
>WENV183493581
OMGJ01000535
[OMGJ] human gut metagenome; human gut
15296
15366
+
Gly
CCC
[ENA]
¢þ
>WENV183511428
OMJG01000290
[OMJG] food metagenome; Cotija cheese
315
385
+
Gly
CCC
[ENA]
¢þ
>WENV183605703
OODN01000001
[OODN] human gut metagenome; human gut
172055
172125
+
Gly
CCC
[ENA]
¢þ
>WENV183788969
PPYF01372237
[PPYF] human gut metagenome; stool from patient with Crohn's disease
149
79
-
Gly
CCC
[ENA]
¢þ
>C181182041
CP029616
Bacillota
Ligilactobacillus salivarius DJ-sa-01 [CP029616]
1686004
1685934
-
Gly
CCC
-
¡û
>W09123157
ACGT01000001
Bacillota
Ligilactobacillus salivarius ATCC 11741 [ACGT]
236025
235955
-
Gly
CCC
[ENA]
¡û
>W1910649413
LXYX01000111
Bacillota
Ligilactobacillus salivarius KLW010 [LXYX]
73178
73108
-
Gly
CCC
[ENA]
¡û
>W1910649454
LXYY01000011
Bacillota
Ligilactobacillus salivarius KLW009 [LXYY]
135034
134964
-
Gly
CCC
[ENA]
¡û
>W1910649537
LXYZ01000108
Bacillota
Ligilactobacillus salivarius KLW008 [LXYZ]
45662
45592
-
Gly
CCC
[ENA]
¡û
>W1910649558
LXZA01000011
Bacillota
Ligilactobacillus salivarius KLW007 [LXZA]
33672
33742
+
Gly
CCC
[ENA]
¡û
>W1910649627
LXZB01000023
Bacillota
Ligilactobacillus salivarius KLW006 [LXZB]
33681
33751
+
Gly
CCC
[ENA]
¡û
>W1910649682
LXZC01000011
Bacillota
Ligilactobacillus salivarius KLW005 [LXZC]
24241
24311
+
Gly
CCC
[ENA]
¡û
>W1910649774
LXZD01000183
Bacillota
Ligilactobacillus salivarius KLW004 [LXZD]
14158
14088
-
Gly
CCC
[ENA]
¡û
>W1910649829
LXZE01000177
Bacillota
Ligilactobacillus salivarius KLW003 [LXZE]
14158
14088
-
Gly
CCC
[ENA]
¡û
>W1910649868
LXZF01000063
Bacillota
Ligilactobacillus salivarius KLW002 [LXZF]
24247
24317
+
Gly
CCC
[ENA]
¡û
>W1910649924
LXZH01000049
Bacillota
Ligilactobacillus salivarius KLF007 [LXZH]
47562
47632
+
Gly
CCC
[ENA]
¡û
>W1910649947
LXZJ01000037
Bacillota
Ligilactobacillus salivarius KLF005 [LXZJ]
24243
24313
+
Gly
CCC
[ENA]
¡û
>W1910650047
LXZK01000095
Bacillota
Ligilactobacillus salivarius KLF004 [LXZK]
6985
6915
-
Gly
CCC
[ENA]
¡û
>W1910650082
LXZL01000069
Bacillota
Ligilactobacillus salivarius KLF003 [LXZL]
77232
77162
-
Gly
CCC
[ENA]
¡û
>W1910650155
LXZM01000146
Bacillota
Ligilactobacillus salivarius KLF002 [LXZM]
51838
51908
+
Gly
CCC
[ENA]
¡û
>W1910650158
LXZO01000055
Bacillota
Ligilactobacillus salivarius KLA006 [LXZO]
41017
41087
+
Gly
CCC
[ENA]
¡û
>W1910650225
LXZP01000012
Bacillota
Ligilactobacillus salivarius KLA005 [LXZP]
2819
2749
-
Gly
CCC
[ENA]
¡û
>W1910650284
LXZQ01000017
Bacillota
Ligilactobacillus salivarius KLA004 [LXZQ]
41019
41089
+
Gly
CCC
[ENA]
¡û
>W1910650327
LXZR01000018
Bacillota
Ligilactobacillus salivarius KLA003 [LXZR]
41020
41090
+
Gly
CCC
[ENA]
¡û
>W1910650393
LXZS01000008
Bacillota
Ligilactobacillus salivarius KLA002 [LXZS]
41009
41079
+
Gly
CCC
[ENA]
¡û
>W1910650456
LXZT01000013
Bacillota
Ligilactobacillus salivarius KLA001 [LXZT]
41019
41089
+
Gly
CCC
[ENA]
¡û
>W1910874538
NDYW01000023
Bacillota
Ligilactobacillus salivarius L28 [NDYW]
4608
4678
+
Gly
CCC
[ENA]
¡û
>W1911569789
PCZA01000016
Bacillota
Lactobacillus sp. UMNPBX9 [PCZA]
43048
42978
-
Gly
CCC
[ENA]
¡û
>W1911570176
PCZH01000011
Bacillota
Lactobacillus sp. UMNPBX2 [PCZH]
43049
42979
-
Gly
CCC
[ENA]
¡û
>W1810070408
PECX01000001
Bacillota
Ligilactobacillus salivarius SGL 03 [PECX]
977417
977487
+
Gly
CCC
[ENA]
¡û
>W1810185958
PKGN01000001
Bacillota
Ligilactobacillus salivarius 290 [PKGN]
247
177
-
Gly
CCC
[ENA]
¡û
>W1810472378
QAGU01000001
Bacillota
Ligilactobacillus salivarius DS2_12 [QAGU]
236153
236083
-
Gly
CCC
[ENA]
¡û
>W1810472424
QAGV01000001
Bacillota
Ligilactobacillus salivarius DS11_12 [QAGV]
286565
286635
+
Gly
CCC
[ENA]
¡û
>W1810488185
QAZF01000001
Bacillota
Ligilactobacillus salivarius DS3_12 [QAZF]
239594
239664
+
Gly
CCC
[ENA]
¡û
>W1810488252
QAZG01000001
Bacillota
Ligilactobacillus salivarius DS13_12 [QAZG]
61995
61925
-
Gly
CCC
[ENA]
¡û
>W1810584343
QFAS01000005
Bacillota
Ligilactobacillus salivarius A3iob [QFAS]
136853
136783
-
Gly
CCC
[ENA]
¡û
>W1810797336
QRMK01000002
Bacillota
Ligilactobacillus salivarius AM09-40 [QRMK]
24727
24657
-
Gly
CCC
[ENA]
¡û
>W1810829780
QSLH01000001
Bacillota
Ligilactobacillus salivarius AM25-8 [QSLH]
229669
229599
-
Gly
CCC
[ENA]
¡û
>W1810838150
QSTB01000001
Bacillota
Ligilactobacillus salivarius OM08-20 [QSTB]
146956
146886
-
Gly
CCC
[ENA]
¡û
>C151030965
CP007646
Bacillota
Ligilactobacillus salivarius JCM1046 [CP007646]
738933
738863
-
Gly
CCC
[Ensembl]
¡û
>C151082344
CP011403
Bacillota
Ligilactobacillus salivarius str. Ren [CP011403]
715223
715153
-
Gly
CCC
[Ensembl]
¡û
>W10124270
AEBA01000090
Bacillota
Ligilactobacillus salivarius ACS-116-V-Col5a [AEBA]
13626
13556
-
Gly
CCC
[ENA]
¡û
>C10109080
CP002034
Bacillota
Ligilactobacillus salivarius CECT 5713 [CP002034]
724206
724136
-
Gly
CCC
[Ensembl]
¡û
>W1511441057
JUQA01000058
Bacillota
Ligilactobacillus salivarius 866_LSAL [JUQA]
78067
77997
-
Gly
CCC
[ENA]
¡û
>W1511443803
JUTI01000015
Bacillota
Ligilactobacillus salivarius 778_LSAL [JUTI]
170618
170688
+
Gly
CCC
[ENA]
¡û
>W1511448796
JVAF01000039
Bacillota
Ligilactobacillus salivarius 609_LSAL [JVAF]
1673
1603
-
Gly
CCC
[ENA]
¡û
>W11131157
AEBA01000090
Bacillota
Ligilactobacillus salivarius ACS-116-V-Col5a [AEBA]
13626
13556
-
Gly
CCC
[ENA]
¡û
>W11167223
AFMN01000001
Bacillota
Ligilactobacillus salivarius NIAS840 [AFMN]
1235781
1235711
-
Gly
CCC
[ENA]
¡û
>W11168594
AFOI01000004
Bacillota
Ligilactobacillus salivarius GJ-24 [AFOI]
201422
201492
+
Gly
CCC
[ENA]
¡û
>W121045144
AICL01000003
Bacillota
Ligilactobacillus salivarius SMXD51 [AICL]
896873
896803
-
Gly
CCC
[ENA]
¡û
>W1610031392
AYYT01000001
Bacillota
Ligilactobacillus salivarius DSM 20555 = ATCC 11741 [AYYT]
183037
183107
+
Gly
CCC
[ENA]
¡û
>W1610036506
AZFI01000217
Bacillota
Ligilactobacillus acidipiscis DSM 15836 [AZFI]
442
512
+
Gly
CCC
[ENA]
¡û
>W1710033545
AZFI01000217
Bacillota
Ligilactobacillus acidipiscis DSM 15836 [AZFI]
442
512
+
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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