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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.412930 (13 seq.)
>A171002110
CP002588
Euryarchaeota
Archaeoglobus veneficus SNP6 [CP002588]
1768918
1768848
-
Gly
TCC
-
¡û
>A171003814
CP006577
Euryarchaeota
Archaeoglobus fulgidus DSM 8774 [CP006577]
823481
823551
+
Gly
TCC
-
¡û
>A171005674
CP009552
Euryarchaeota
Geoglobus acetivorans SBH6 [CP009552]
1771289
1771218
-
Gly
TCC
-
¡û
>A171006143
CP011267
Euryarchaeota
Geoglobus ahangari 234 [CP011267]
487957
487887
-
Gly
TCC
-
¡û
>WENV181409045
OGCH01039192
[OGCH] hot springs metagenome; hot springs
460
390
-
Gly
TCC
[ENA]
¢þ
>At0613
AE000782
Euryarchaeota
Archaeoglobus fulgidus DSM 4304 [AE000782]
778083
778153
+
Gly
TCC
[Ensembl]
¡û
>WENV170675810
LDZQ01000590
[LDZQ] terrestrial metagenome; oil reservoir sample I2
30568
30638
+
Gly
TCC
[ENA]
¢þ
>WENV170676391
LDZR01002381
[LDZR] terrestrial metagenome; oil reservoir sample K2
5007
4937
-
Gly
TCC
[ENA]
¢þ
>WENV170779094
LZCG01000741
[LZCG] oil field metagenome; sample BH-FW-1 from oil reservoir
820
750
-
Gly
TCC
[ENA]
¢þ
>WENV170779267
LZQN01000103
[LZQN] oil field metagenome; sample BH-FW-7 from oil reservoir
1453
1383
-
Gly
TCC
[ENA]
¢þ
>W1910200360
FJNF01000116
Euryarchaeota
Archaeoglobus fulgidus [FJNF]
35799
35869
+
Gly
TCC
[ENA]
¡û
>W1610612337
LGEQ01000017
Euryarchaeota
Archaeoglobus fulgidus [LGEQ]
30568
30638
+
Gly
TCC
[ENA]
¡û
>W1610612609
LGEX01000023
Euryarchaeota
Archaeoglobus fulgidus [LGEX]
5007
4937
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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