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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.413198 (50 seq.)
>W1710862422
LMEJ01000004
Alphaproteobacteria
Sphingomonas sp. Root1294 [LMEJ]
49006
48933
-
Gly
TCC
[ENA]
¡û
>W1710863916
LMFM01000009
Alphaproteobacteria
Sphingomonas sp. Root50 [LMFM]
48569
48496
-
Gly
TCC
[ENA]
¡û
>W1710867184
LMIB01000012
Alphaproteobacteria
Sphingomonas sp. Root710 [LMIB]
1051534
1051461
-
Gly
TCC
[ENA]
¡û
>W1710867279
LMID01000002
Alphaproteobacteria
Sphingomonas sp. Root720 [LMID]
48604
48531
-
Gly
TCC
[ENA]
¡û
>W131046810
AMSR01000012
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 31822 [AMSR]
20626
20699
+
Gly
TCC
[ENA]
¡û
>W1711069399
LSFP01000002
Alphaproteobacteria
Zymomonas mobilis [LSFP]
430580
430653
+
Gly
TCC
[ENA]
¡û
>W131196594
ASTM01000074
Alphaproteobacteria
Sphingomonas sp. YL-JM2C [ASTM]
47433
47506
+
Gly
TCC
[ENA]
¡û
>W1711386354
MEFG01000013
Alphaproteobacteria
Sphingomonas sp. SCN 67-18 [MEFG]
113672
113745
+
Gly
TCC
[ENA]
¡û
>C171115168
CP021053
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NRRL B-1960 [CP021053]
268003
267930
-
Gly
TCC
-
¡û
>C024980
CP000699
Alphaproteobacteria
Rhizorhabdus wittichii RW1 [CP000699]
2473669
2473596
-
Gly
TCC
[Ensembl]
¡û
>C027924
AE008692
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 [AE008692]
992100
992173
+
Gly
TCC
[Ensembl]
¡û
>WENV180018077
FSYC01000340
[FSYC] metagenome; soil
393
466
+
Gly
TCC
[ENA]
¢þ
>WENV180018600
FSZX01000042
[FSZX] metagenome; soil
308
381
+
Gly
TCC
[ENA]
¢þ
>WENV180292723
OBIV01594662
[OBIV] soil metagenome; Clay
202
275
+
Gly
TCC
[ENA]
¢þ
>WENV181172313
OEIV010598356
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
118
191
+
Gly
TCC
[ENA]
¢þ
>WENV183693855
ORMF012151345
[ORMF] groundwater metagenome; groundwater
10292
10365
+
Gly
TCC
[ENA]
¢þ
>WENV183749493
PPFU01176869
[PPFU] hypolithon metagenome; Antarctic Hypolithon
136
63
-
Gly
TCC
[ENA]
¢þ
>C181081590
CP023449
Alphaproteobacteria
Rhizorhabdus dicambivorans Ndbn-20 [CP023449]
861379
861452
+
Gly
TCC
-
¡û
>C181088860
CP023677
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 [CP023677]
994470
994543
+
Gly
TCC
-
¡û
>C181088911
CP023682
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 [CP023682]
994470
994543
+
Gly
TCC
-
¡û
>C181089238
CP023715
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 [CP023715]
994470
994543
+
Gly
TCC
-
¡û
>C191100517
CP033087
Alphaproteobacteria
Commensalibacter melissae AMU001 [CP033087]
1758956
1758883
-
Gly
TCC
-
¡û
>C191145585
CP035711
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 [CP035711]
992069
992142
+
Gly
TCC
-
¡û
>C191145636
CP035712
Alphaproteobacteria
Zymomonas mobilis ZM4* [CP035712]
992069
992142
+
Gly
TCC
-
¡û
>C191145687
CP035713
Alphaproteobacteria
Zymomonas mobilis ER79ag [CP035713]
992069
992142
+
Gly
TCC
-
¡û
>W09106524
AAVK01000005
Alphaproteobacteria
Rhizorhabdus wittichii RW1 [AAVK]
56747
56674
-
Gly
TCC
[ENA]
¡û
>W09133966
ACQU01000004
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 10988 [ACQU]
56330
56257
-
Gly
TCC
[ENA]
¡û
>W141819172
JQMC01000007
Alphaproteobacteria
Rhizorhabdus wittichii [JQMC]
4756
4829
+
Gly
TCC
[ENA]
¡û
>W1910182417
BJMW01000008
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NBRC 13756 [BJMW]
20253
20326
+
Gly
TCC
[ENA]
¡û
>W1910182453
BJMX01000001
Alphaproteobacteria
Zymomonas mobilis subsp. pomaceae NBRC 13757 [BJMX]
18769
18696
-
Gly
TCC
[ENA]
¡û
>C141008825
CP006818
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 [CP006818]
383117
383044
-
Gly
TCC
[Ensembl]
¡û
>W1911411141
NWUF01000006
Alphaproteobacteria
Rhizorhabdus dicambivorans Ndbn-20m [NWUF]
149986
150059
+
Gly
TCC
[ENA]
¡û
>W1810604015
QGLT01000001
Alphaproteobacteria
Commensalibacter melissae ESL0284 [QGLT]
767713
767640
-
Gly
TCC
[ENA]
¡û
>C151004627
CP003709
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NRRL B-12526 [CP003709]
382892
382819
-
Gly
TCC
[Ensembl]
¡û
>C151004678
CP003715
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 [CP003715]
382892
382819
-
Gly
TCC
[Ensembl]
¡û
>ENV09000650
ABSP01008584
Freshwater sediment metagenome lwMethane_C1
408
481
+
Gly
TCC
[ENA]
¡û
>C10114611
CP001722
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NCIMB 11163 [CP001722]
378501
378428
-
Gly
TCC
[Ensembl]
¡û
>C11124251
CP002865
Alphaproteobacteria
Zymomonas mobilis subsp. pomaceae ATCC 29192 [CP002865]
341914
341841
-
Gly
TCC
[Ensembl]
¡û
>W1511581122
LARW01000109
Alphaproteobacteria
Sphingomonas sp. SRS2 [LARW]
66212
66285
+
Gly
TCC
[ENA]
¡û
>C121003169
CP002850
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 10988 [CP002850]
378762
378689
-
Gly
TCC
[Ensembl]
¡û
>C121015285
CP003704
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 29191 [CP003704]
375855
375782
-
Gly
TCC
[Ensembl]
¡û
>W121034440
AHKO01000506
Alphaproteobacteria
Rhizorhabdus wittichii DP58 [AHKO]
3830
3757
-
Gly
TCC
[ENA]
¡û
>W1610724768
LMEJ01000004
Alphaproteobacteria
Sphingomonas sp. Root1294 [LMEJ]
49006
48933
-
Gly
TCC
[ENA]
¡û
>W1610726262
LMFM01000009
Alphaproteobacteria
Sphingomonas sp. Root50 [LMFM]
48569
48496
-
Gly
TCC
[ENA]
¡û
>W1610729530
LMIB01000012
Alphaproteobacteria
Sphingomonas sp. Root710 [LMIB]
1051534
1051461
-
Gly
TCC
[ENA]
¡û
>W1610729625
LMID01000002
Alphaproteobacteria
Sphingomonas sp. Root720 [LMID]
48604
48531
-
Gly
TCC
[ENA]
¡û
>W1610909927
LSFP01000002
Alphaproteobacteria
Zymomonas mobilis [LSFP]
430580
430653
+
Gly
TCC
[ENA]
¡û
>W1710512373
FMZJ01000002
Alphaproteobacteria
Sphingomonas sp. YR710 [FMZJ]
224402
224329
-
Gly
TCC
[ENA]
¡û
>W1710602760
FUYM01000011
Alphaproteobacteria
Rhizorhabdus histidinilytica [FUYM]
58705
58778
+
Gly
TCC
[ENA]
¡û
>W1710743455
LGVA01000002
Alphaproteobacteria
Sphingomonas sp. Ndbn-20 [LGVA]
104557
104484
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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