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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.413204 (113 seq.)
>W1711167833
LVWX01000039
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LVWX]
185
115
-
Cys
GCA
[ENA]
¡û
>W1711167863
LVWY01000007
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LVWY]
720
790
+
Cys
GCA
[ENA]
¡û
>W131204364
ATBQ01000223
Bacillota
Lactobacillus delbrueckii subsp. lactis CRL581 [ATBQ]
16697
16627
-
Cys
GCA
[ENA]
¡û
>W1711665865
MRBF01000001
Bacillota
Lactobacillus delbrueckii subsp. lactis [MRBF]
43873
43943
+
Cys
GCA
[ENA]
¡û
>W1711665896
MRBF01000002
Bacillota
Lactobacillus delbrueckii subsp. lactis [MRBF]
1336543
1336613
+
Cys
GCA
[ENA]
¡û
>W1711665923
MRBF01000002
Bacillota
Lactobacillus delbrueckii subsp. lactis [MRBF]
2209825
2209755
-
Cys
GCA
[ENA]
¡û
>W1711665987
MRBF01000003
Bacillota
Lactobacillus delbrueckii subsp. lactis [MRBF]
283
213
-
Cys
GCA
[ENA]
¡û
>W1711678825
MRUN01000012
Bacillota
Lactobacillus delbrueckii subsp. lactis DSM 20072 [MRUN]
1313599
1313529
-
Cys
GCA
[ENA]
¡û
>W1711678864
MRUN01000012
Bacillota
Lactobacillus delbrueckii subsp. lactis DSM 20072 [MRUN]
501051
500981
-
Cys
GCA
[ENA]
¡û
>C171048694
CP016393
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ND04 [CP016393]
1235508
1235578
+
Cys
GCA
-
¡û
>C171048748
CP016393
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ND04 [CP016393]
166464
166394
-
Cys
GCA
-
¡û
>C171075483
CP018215
Bacillota
Lactobacillus delbrueckii subsp. lactis KCCM 34717 [CP018215]
30643
30713
+
Cys
GCA
-
¡û
>C171075552
CP018215
Bacillota
Lactobacillus delbrueckii subsp. lactis KCCM 34717 [CP018215]
901363
901293
-
Cys
GCA
-
¡û
>C171075581
CP018216
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii KCTC 13731 [CP018216]
844119
844189
+
Cys
GCA
-
¡û
>C171075610
CP018216
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii KCTC 13731 [CP018216]
1576943
1576873
-
Cys
GCA
-
¡û
>C171075666
CP018217
Bacillota
Lactobacillus delbrueckii subsp. sunkii JCM 17838 [CP018217]
858401
858471
+
Cys
GCA
-
¡û
>C171075703
CP018217
Bacillota
Lactobacillus delbrueckii subsp. sunkii JCM 17838 [CP018217]
1661324
1661254
-
Cys
GCA
-
¡û
>C171081365
CP018614
Bacillota
Lactobacillus delbrueckii subsp. indicus JCM 15610 [CP018614]
1631000
1630930
-
Cys
GCA
-
¡û
>C171081401
CP018614
Bacillota
Lactobacillus delbrueckii subsp. indicus JCM 15610 [CP018614]
1292548
1292478
-
Cys
GCA
-
¡û
>C171089414
CP019120
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus DSM 20080 [CP019120]
797836
797906
+
Cys
GCA
-
¡û
>C171089450
CP019120
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus DSM 20080 [CP019120]
1569410
1569340
-
Cys
GCA
-
¡û
>C171116210
CP021136
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii TUA4408L [CP021136]
1902310
1902380
+
Cys
GCA
-
¡û
>C171116251
CP021136
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii TUA4408L [CP021136]
708385
708315
-
Cys
GCA
-
¡û
>C011370
CR954253
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002 [CR954253]
815520
815590
+
Cys
GCA
[Ensembl]
¡û
>C011407
CR954253
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002 [CR954253]
1566119
1566049
-
Cys
GCA
[Ensembl]
¡û
>C011525
CP000412
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 [CP000412]
801858
801928
+
Cys
GCA
[Ensembl]
¡û
>C011559
CP000412
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 [CP000412]
1584829
1584759
-
Cys
GCA
[Ensembl]
¡û
>W141037908
ALPY01000026
Bacillota
Lactobacillus delbrueckii ZN7a-9 [ALPY]
10073
10143
+
Cys
GCA
[ENA]
¡û
>WENV181660298
OGOF01011631
[OGOF] human gut metagenome; faeces
1146
1216
+
Cys
GCA
[ENA]
¢þ
>WENV181723575
OGPW01009391
[OGPW] human gut metagenome; faeces
2856
2786
-
Cys
GCA
[ENA]
¢þ
>WENV181739173
OGQI01070000
[OGQI] human gut metagenome; faeces
655
585
-
Cys
GCA
[ENA]
¢þ
>W141228055
BALP01000138
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii JCM 1012 [BALP]
185
115
-
Cys
GCA
[ENA]
¡û
>WENV182307886
OHXF01022063
[OHXF] human gut metagenome; feces
223
153
-
Cys
GCA
[ENA]
¢þ
>WENV182309821
OHXK01020767
[OHXK] human gut metagenome; feces
545
475
-
Cys
GCA
[ENA]
¢þ
>WENV182342157
OIAG01040571
[OIAG] human gut metagenome; feces
242
172
-
Cys
GCA
[ENA]
¢þ
>WENV182370022
OICS01000800
[OICS] human gut metagenome; feces
6275
6205
-
Cys
GCA
[ENA]
¢þ
>WENV182381843
OIDR01000340
[OIDR] human gut metagenome; feces
3212
3282
+
Cys
GCA
[ENA]
¢þ
>W141246082
CALZ01000119
Bacillota
Lactobacillus equicursoris 66c [CALZ]
15424
15354
-
Cys
GCA
[ENA]
¡û
>W141246104
CAMA01000023
Bacillota
Lactobacillus equicursoris CIP 110162 [CAMA]
273
343
+
Cys
GCA
[ENA]
¡û
>W141246119
CAMA01000076
Bacillota
Lactobacillus equicursoris CIP 110162 [CAMA]
14793
14723
-
Cys
GCA
[ENA]
¡û
>W141246156
CAMA01000211
Bacillota
Lactobacillus equicursoris CIP 110162 [CAMA]
14793
14723
-
Cys
GCA
[ENA]
¡û
>W141264074
CCDV01000001
Bacillota
Lactobacillus delbrueckii subsp. lactis [CCDV]
995903
995973
+
Cys
GCA
[ENA]
¡û
>W141264108
CCDV01000001
Bacillota
Lactobacillus delbrueckii subsp. lactis [CCDV]
1770158
1770088
-
Cys
GCA
[ENA]
¡û
>W141264950
CCET01000007
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [CCET]
4215
4285
+
Cys
GCA
[ENA]
¡û
>W141264985
CCET01000010
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [CCET]
5871
5941
+
Cys
GCA
[ENA]
¡û
>W141265030
CCEU01000004
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [CCEU]
4248
4318
+
Cys
GCA
[ENA]
¡û
>W141265067
CCEU01000010
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [CCEU]
5858
5928
+
Cys
GCA
[ENA]
¡û
>WENV183166888
OLOY01002507
[OLOY] human gut metagenome; faeces
1263
1193
-
Cys
GCA
[ENA]
¢þ
>WENV183785851
PPYF01298418
[PPYF] human gut metagenome; stool from patient with Crohn's disease
515
585
+
Cys
GCA
[ENA]
¢þ
>C181024959
CP017235
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus L99 [CP017235]
793126
793196
+
Cys
GCA
-
¡û
>C181024996
CP017235
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus L99 [CP017235]
1564123
1564053
-
Cys
GCA
-
¡û
>C181074509
CP022988
Bacillota
Lactobacillus delbrueckii subsp. lactis DSM 20072 [CP022988]
388012
388082
+
Cys
GCA
-
¡û
>C181074548
CP022988
Bacillota
Lactobacillus delbrueckii subsp. lactis DSM 20072 [CP022988]
1200604
1200674
+
Cys
GCA
-
¡û
>C181076035
CP023139
Bacillota
Lactobacillus delbrueckii subsp. lactis KCTC 3034 [CP023139]
958911
958981
+
Cys
GCA
-
¡û
>C181076073
CP023139
Bacillota
Lactobacillus delbrueckii subsp. lactis KCTC 3034 [CP023139]
1832174
1832104
-
Cys
GCA
-
¡û
>C181221067
LT899687
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LT899687]
795607
795677
+
Cys
GCA
-
¡û
>C181221104
LT899687
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LT899687]
1570680
1570610
-
Cys
GCA
-
¡û
>C191063403
CP029250
Bacillota
Lactobacillus delbrueckii [CP029250]
996859
996929
+
Cys
GCA
-
¡û
>C191063440
CP029250
Bacillota
Lactobacillus delbrueckii [CP029250]
1884835
1884765
-
Cys
GCA
-
¡û
>C191089993
CP032451
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus KLDS1.0207 [CP032451]
1257848
1257918
+
Cys
GCA
-
¡û
>C191090047
CP032451
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus KLDS1.0207 [CP032451]
125697
125627
-
Cys
GCA
-
¡û
>C191224680
LS991409
Bacillota
Lactobacillus delbrueckii subsp. lactis [LS991409]
865832
865902
+
Cys
GCA
-
¡û
>C191224717
LS991409
Bacillota
Lactobacillus delbrueckii subsp. lactis [LS991409]
1696408
1696338
-
Cys
GCA
-
¡û
>W09101772
AAGQ01000052
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 [AAGQ]
10133
10063
-
Cys
GCA
[ENA]
¡û
>W09101790
AAGQ01000078
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 [AAGQ]
2185
2115
-
Cys
GCA
[ENA]
¡û
>W1910180937
BJLM01000097
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii NBRC 3534 [BJLM]
184
114
-
Cys
GCA
[ENA]
¡û
>W1910181024
BJLO01000188
Bacillota
Lactobacillus delbrueckii subsp. lactis NBRC 3734 [BJLO]
521
591
+
Cys
GCA
[ENA]
¡û
>W1910182530
BJMY01000056
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus NBRC 13953 [BJMY]
184
114
-
Cys
GCA
[ENA]
¡û
>W1910186319
CCDS01000014
Bacillota
Lactobacillus delbrueckii subsp. lactis [CCDS]
11311
11381
+
Cys
GCA
[ENA]
¡û
>W1910186335
CCDS01000023
Bacillota
Lactobacillus delbrueckii subsp. lactis [CCDS]
572
502
-
Cys
GCA
[ENA]
¡û
>W1910186364
CCDT01000002
Bacillota
Lactobacillus delbrueckii subsp. lactis [CCDT]
4227
4297
+
Cys
GCA
[ENA]
¡û
>W1910186409
CCDT01000008
Bacillota
Lactobacillus delbrueckii subsp. lactis [CCDT]
11080
11150
+
Cys
GCA
[ENA]
¡û
>W1910186467
CCDU01000022
Bacillota
Lactobacillus delbrueckii subsp. lactis [CCDU]
11335
11405
+
Cys
GCA
[ENA]
¡û
>W1911631574
PUFG01000021
Bacillota
Lactobacillus delbrueckii subsp. jakobsenii DSM 26046 [PUFG]
10257
10327
+
Cys
GCA
[ENA]
¡û
>W1911631600
PUFG01000037
Bacillota
Lactobacillus delbrueckii subsp. jakobsenii DSM 26046 [PUFG]
722
792
+
Cys
GCA
[ENA]
¡û
>W1911631610
PUFG01000039
Bacillota
Lactobacillus delbrueckii subsp. jakobsenii DSM 26046 [PUFG]
17563
17493
-
Cys
GCA
[ENA]
¡û
>W1911702106
QNXB01000049
Bacillota
Lactobacillus delbrueckii TJA31 [QNXB]
513
583
+
Cys
GCA
[ENA]
¡û
>W1810000544
BEWJ01000099
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii NBRC 3202 [BEWJ]
656
726
+
Cys
GCA
[ENA]
¡û
>W1810190917
PKKE01000023
Bacillota
Lactobacillus delbrueckii UMB0003 [PKKE]
22465
22395
-
Cys
GCA
[ENA]
¡û
>W10124029
AEAT01000059
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 [AEAT]
640
710
+
Cys
GCA
[ENA]
¡û
>C11112456
CP000156
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus 2038 [CP000156]
799923
799993
+
Cys
GCA
[Ensembl]
¡û
>C11112472
CP000156
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus 2038 [CP000156]
830320
830390
+
Cys
GCA
[Ensembl]
¡û
>C11112537
CP002341
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ND02 [CP002341]
867807
867877
+
Cys
GCA
[Ensembl]
¡û
>C11112576
CP002341
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ND02 [CP002341]
1768639
1768569
-
Cys
GCA
[Ensembl]
¡û
>W11130866
AEAT01000059
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 [AEAT]
640
710
+
Cys
GCA
[ENA]
¡û
>W1511510292
JXRV01000040
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus CRL871 [JXRV]
58647
58577
-
Cys
GCA
[ENA]
¡û
>W1511510321
JXRV01000086
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus CRL871 [JXRV]
57
127
+
Cys
GCA
[ENA]
¡û
>W1511510361
JXRV01000496
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus CRL871 [JXRV]
168
98
-
Cys
GCA
[ENA]
¡û
>W11152232
AEXU01000060
Bacillota
Lactobacillus delbrueckii subsp. lactis DSM 20072 [AEXU]
177
107
-
Cys
GCA
[ENA]
¡û
>W1511694292
LGAS01000049
Bacillota
Lactobacillus delbrueckii subsp. indicus JCM 15610 [LGAS]
12693
12623
-
Cys
GCA
[ENA]
¡û
>W1511698343
LGHR01000023
Bacillota
Lactobacillus delbrueckii subsp. sunkii JCM 17838 [LGHR]
324
254
-
Cys
GCA
[ENA]
¡û
>C161057576
CP013610
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus MN-BM-F01 [CP013610]
813253
813323
+
Cys
GCA
[Ensembl]
¡û
>C161057607
CP013610
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus MN-BM-F01 [CP013610]
1597005
1596935
-
Cys
GCA
[Ensembl]
¡û
>W121009809
AGFO01000053
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1632 [AGFO]
184
114
-
Cys
GCA
[ENA]
¡û
>W121010016
AGHW01000004
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1519 [AGHW]
636
706
+
Cys
GCA
[ENA]
¡û
>W1610033091
AZCR01000028
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii DSM 20074 = JCM 1012 [AZCR]
83
153
+
Cys
GCA
[ENA]
¡û
>W1610033147
AZCR01000174
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii DSM 20074 = JCM 1012 [AZCR]
81
151
+
Cys
GCA
[ENA]
¡û
>W1610033759
AZDE01000195
Bacillota
Lactobacillus delbrueckii subsp. lactis DSM 20072 [AZDE]
128
58
-
Cys
GCA
[ENA]
¡û
>W1610034527
AZDU01000150
Bacillota
Lactobacillus equicursoris DSM 19284 = JCM 14600 = CIP 110162 [AZDU]
221
291
+
Cys
GCA
[ENA]
¡û
>W1610036656
AZFL01000065
Bacillota
Lactobacillus delbrueckii subsp. indicus DSM 15996 [AZFL]
706
776
+
Cys
GCA
[ENA]
¡û
>W1610044412
BBAN01000009
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002 [BBAN]
636
706
+
Cys
GCA
[ENA]
¡û
>W1610045870
BBBW01000109
Bacillota
Lactobacillus equicursoris DSM 19284 = JCM 14600 = CIP 110162 [BBBW]
97
27
-
Cys
GCA
[ENA]
¡û
>W1610527995
JQAV01000062
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002 DSM 20081 [JQAV]
156
86
-
Cys
GCA
[ENA]
¡û
>W1610529699
JQCG01000094
Bacillota
Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046 [JQCG]
130
60
-
Cys
GCA
[ENA]
¡û
>W1610977902
LVWX01000039
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LVWX]
185
115
-
Cys
GCA
[ENA]
¡û
>W1610977932
LVWY01000007
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LVWY]
720
790
+
Cys
GCA
[ENA]
¡û
>W1710030363
AZCR01000028
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii DSM 20074 = JCM 1012 [AZCR]
83
153
+
Cys
GCA
[ENA]
¡û
>W1710030419
AZCR01000174
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii DSM 20074 = JCM 1012 [AZCR]
81
151
+
Cys
GCA
[ENA]
¡û
>W1710030937
AZDE01000195
Bacillota
Lactobacillus delbrueckii subsp. lactis DSM 20072 [AZDE]
128
58
-
Cys
GCA
[ENA]
¡û
>W1710031654
AZDU01000150
Bacillota
Lactobacillus equicursoris DSM 19284 = JCM 14600 = CIP 110162 [AZDU]
221
291
+
Cys
GCA
[ENA]
¡û
>W1710033695
AZFL01000065
Bacillota
Lactobacillus delbrueckii subsp. indicus DSM 15996 [AZFL]
706
776
+
Cys
GCA
[ENA]
¡û
>W1710042711
BBBW01000109
Bacillota
Lactobacillus equicursoris DSM 19284 = JCM 14600 = CIP 110162 [BBBW]
97
27
-
Cys
GCA
[ENA]
¡û
>W1710631289
JQCG01000094
Bacillota
Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046 [JQCG]
130
60
-
Cys
GCA
[ENA]
¡û
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Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
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Direction
AA
Anticodon
Genome/Seq. Info.
Decision
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Representative sequence of each cluster
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