This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.413212 (38 seq.)
>W131036020
AJUB01000015
Cyanobacteriota
Leptolyngbyaceae cyanobacterium JSC-12 JSC-12 [AJUB]
617921
617848
-
Gly
TCC
[ENA]
¡û
>W131065859
ANNX01000120
Cyanobacteriota
Scytonema hofmannii PCC 7110 [ANNX]
36832
36902
+
Gly
TCC
[ENA]
¡û
>W1711666585
MRCC01000007
Cyanobacteriota
Chroogloeocystis siderophila 5.2 s.c.1 [MRCC]
113766
113836
+
Gly
TCC
[ENA]
¡û
>W1711979770
NDGV01000064
Cyanobacteriota
cyanobacterium TDX16 [NDGV]
2808
2738
-
Gly
TCC
[ENA]
¡û
>C171097536
CP019636
Cyanobacteriota
Nostocales cyanobacterium HT-58-2 [CP019636]
5297829
5297899
+
Gly
TCC
-
¡û
>WENV180036477
FVAA010122066
[FVAA] soil metagenome; Soil
1
71
+
Gly
TCC
[ENA]
¢þ
>W141021402
AJLM01000093
Cyanobacteriota
Chlorogloeopsis fritschii PCC 9212 [AJLM]
7114
7044
-
Gly
TCC
[ENA]
¡û
>W141021437
AJLN01000069
Cyanobacteriota
Chlorogloeopsis fritschii PCC 6912 [AJLN]
7195
7125
-
Gly
TCC
[ENA]
¡û
>W08009349
ABOY01000001
Cyanobacteriota
Gloeothece citriformis PCC 7424 [ABOY]
109984
109914
-
Gly
TCC
[ENA]
¡û
>W08011346
ABVE01000002
Cyanobacteriota
Gloeothece verrucosa PCC 7822 [ABVE]
5053
4983
-
Gly
TCC
[ENA]
¡û
>WENV181410873
OGCI01007491
[OGCI] hot springs metagenome; Hot spring water
385
315
-
Gly
TCC
[ENA]
¢þ
>WENV170025391
BCQL01312925
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
272
202
-
Gly
TCC
[ENA]
¢þ
>WENV170984432
MWVV01285059
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
292
362
+
Gly
TCC
[ENA]
¢þ
>CHL1810002030
FM957154
Stramenopiles
Fucus vesiculosus (FM957154)
76820
76890
+
Gly
TCC
[ENA]
¡û
>CHL1810002162
FP102296
Stramenopiles
Ectocarpus siliculosus (FP102296)
136448
136378
-
Gly
TCC
[ENA]
¡û
>CHL1810005437
JQ405663
Stramenopiles
Saccharina japonica (JQ405663)
78220
78150
-
Gly
TCC
[ENA]
¡û
>CHL1810017338
KP298002
Stramenopiles
Undaria pinnatifida (KP298002)
78187
78117
-
Gly
TCC
[ENA]
¡û
>CHL1810018132
KP881334
Stramenopiles
Sargassum horneri (KP881334)
76020
76090
+
Gly
TCC
[ENA]
¡û
>CHL1810019017
KR336545
Stramenopiles
Costaria costata (KR336545)
78029
77959
-
Gly
TCC
[ENA]
¡û
>CHL1810024294
KU164871
Stramenopiles
Pleurocladia lacustris Sa2 (KU164871)
3950
4020
+
Gly
TCC
[ENA]
¡û
>CHL1810042847
KY433579
Stramenopiles
Dictyopteris divaricata (KY433579)
76878
76808
-
Gly
TCC
[ENA]
¡û
>C09103549
CP001291
Cyanobacteriota
Gloeothece citriformis PCC 7424 [CP001291]
5445226
5445156
-
Gly
TCC
[Ensembl]
¡û
>W1910812564
MVDI01000015
Cyanobacteriota
Chroococcidiopsis sp. TS-821 [MVDI]
81302
81232
-
Gly
TCC
[ENA]
¡û
>W1910909798
NGZU01000015
Cyanobacteriota
Fischerella thermalis WC114 [NGZU]
12161
12231
+
Gly
TCC
[ENA]
¡û
>W1911178235
NQMD01000990
Cyanobacteriota
Fischerella thermalis CCMEE 5196 [NQMD]
6481
6551
+
Gly
TCC
[ENA]
¡û
>W1911638329
PVWL01000036
Cyanobacteriota
Cyanosarcina burmensis burmensis CCALA 770 [PVWL]
5359
5289
-
Gly
TCC
[ENA]
¡û
>W1911638358
PVWM01000032
Cyanobacteriota
Chroococcidiopsis cubana CCALA 043 [PVWM]
14063
13993
-
Gly
TCC
[ENA]
¡û
>W1911641163
PYCI01000014
Cyanobacteriota
Chroococcidiopsis sp. CCALA 051 [PYCI]
61647
61717
+
Gly
TCC
[ENA]
¡û
>W1911741999
QVFW01000009
Cyanobacteriota
Scytonema millei VB511283 [QVFW]
181848
181778
-
Gly
TCC
[ENA]
¡û
>W1810076191
PEIG01000002
Cyanobacteriota
Gloeocapsopsis sp. IPPAS B-1203 IPPAS B-1203 [PEIG]
290308
290378
+
Gly
TCC
[ENA]
¡û
>W1810296725
PTJN01000123
Cyanobacteriota
Gloeocapsopsis dulcis AAB1 [PTJN]
264
194
-
Gly
TCC
[ENA]
¡û
>C11106722
CP002198
Cyanobacteriota
Gloeothece verrucosa PCC 7822 [CP002198]
4244807
4244877
+
Gly
TCC
[Ensembl]
¡û
>C11106766
CP002198
Cyanobacteriota
Gloeothece verrucosa PCC 7822 [CP002198]
4244807
4244877
+
Gly
TCC
[Ensembl]
¡û
>W1511013869
JHEG02000048
Cyanobacteriota
Tolypothrix bouteillei VB521301 [JHEG]
1971139
1971069
-
Gly
TCC
[ENA]
¡û
>W1511401772
JTJC01000084
Cyanobacteriota
Scytonema millei VB511283 [JTJC]
1981574
1981644
+
Gly
TCC
[ENA]
¡û
>C131004510
CP003597
Cyanobacteriota
Chroococcidiopsis thermalis PCC 7203 [CP003597]
2260694
2260764
+
Gly
TCC
[Ensembl]
¡û
>C131004634
CP003607
Cyanobacteriota
Oscillatoria acuminata PCC 6304 [CP003607]
1421956
1422026
+
Gly
TCC
[Ensembl]
¡û
>C131004991
CP003646
Cyanobacteriota
Gloeocapsa sp. PCC 7428 [CP003646]
2640694
2640624
-
Gly
TCC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK