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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.413245 (28 seq.)
>W1711027059
LRDC01000009
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
76148
76074
-
Gln
TTG
[ENA]
¡û
>W1711027060
LRDC01000009
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
76050
75976
-
Gln
TTG
[ENA]
¡û
>W1711027063
LRDC01000009
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
75666
75592
-
Gln
TTG
[ENA]
¡û
>C021947
CP000447
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [CP000447]
843536
843610
+
Gln
TTG
[Ensembl]
¡û
>C021948
CP000447
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [CP000447]
843634
843708
+
Gln
TTG
[Ensembl]
¡û
>C021951
CP000447
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [CP000447]
844017
844091
+
Gln
TTG
[Ensembl]
¡û
>WENV170022235
BCQK01002501
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
2332
2406
+
Gln
TTG
[ENA]
¢þ
>WENV170022236
BCQK01002501
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
2430
2504
+
Gln
TTG
[ENA]
¢þ
>C191117230
CP034015
Gammaproteobacteria
Shewanella livingstonensis LMG 19866 [CP034015]
4090982
4090908
-
Gln
TTG
-
¡û
>C191117231
CP034015
Gammaproteobacteria
Shewanella livingstonensis LMG 19866 [CP034015]
4090884
4090810
-
Gln
TTG
-
¡û
>C191117234
CP034015
Gammaproteobacteria
Shewanella livingstonensis LMG 19866 [CP034015]
4090482
4090408
-
Gln
TTG
-
¡û
>C191173244
CP039928
Gammaproteobacteria
Shewanella sp. MEBiC00475 [CP039928]
1224622
1224548
-
Gln
TTG
-
¡û
>C191173245
CP039928
Gammaproteobacteria
Shewanella sp. MEBiC00475 [CP039928]
1224524
1224450
-
Gln
TTG
-
¡û
>C191185833
CP041036
Gammaproteobacteria
Shewanella polaris SM1901 [CP041036]
907421
907495
+
Gln
TTG
-
¡û
>C191185834
CP041036
Gammaproteobacteria
Shewanella polaris SM1901 [CP041036]
907519
907593
+
Gln
TTG
-
¡û
>W09103093
AAIV01000005
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [AAIV]
210135
210061
-
Gln
TTG
[ENA]
¡û
>W09103094
AAIV01000005
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [AAIV]
210037
209963
-
Gln
TTG
[ENA]
¡û
>W09103097
AAIV01000005
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [AAIV]
209654
209580
-
Gln
TTG
[ENA]
¡û
>W1810155310
PJAP01000734
Gammaproteobacteria
Shewanella sp. 11B5 [PJAP]
476
402
-
Gln
TTG
[ENA]
¡û
>W1810155311
PJAP01000734
Gammaproteobacteria
Shewanella sp. 11B5 [PJAP]
378
304
-
Gln
TTG
[ENA]
¡û
>W1810157818
PJCD01000044
Gammaproteobacteria
Shewanella sp. ALD9 [PJCD]
27593
27667
+
Gln
TTG
[ENA]
¡û
>W1810157819
PJCD01000044
Gammaproteobacteria
Shewanella sp. ALD9 [PJCD]
27691
27765
+
Gln
TTG
[ENA]
¡û
>W1810157822
PJCD01000044
Gammaproteobacteria
Shewanella sp. ALD9 [PJCD]
28074
28148
+
Gln
TTG
[ENA]
¡û
>W1810157859
PJCE01000001
Gammaproteobacteria
Shewanella sp. Actino-trap-3 [PJCE]
4224929
4225003
+
Gln
TTG
[ENA]
¡û
>W1810157860
PJCE01000001
Gammaproteobacteria
Shewanella sp. Actino-trap-3 [PJCE]
4225027
4225101
+
Gln
TTG
[ENA]
¡û
>W1610875171
LRDC01000009
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
76148
76074
-
Gln
TTG
[ENA]
¡û
>W1610875172
LRDC01000009
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
76050
75976
-
Gln
TTG
[ENA]
¡û
>W1610875175
LRDC01000009
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
75666
75592
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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