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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.413250 (25 seq.)
>A171001429
CP001994
Euryarchaeota
Methanohalophilus mahii DSM 5219 [CP001994]
318348
318422
+
His
GTG
-
¡û
>A171001727
CP002101
Euryarchaeota
Methanosalsum zhilinae DSM 4017 [CP002101]
1484807
1484736
-
His
GTG
-
¡û
>A171004727
CP009505
Euryarchaeota
Methanosarcina sp. MTP4 [CP009505]
1429973
1430047
+
His
GTG
-
¡û
>A171005350
CP009518
Euryarchaeota
Methanococcoides methylutens MM1 [CP009518]
324775
324849
+
His
GTG
-
¡û
>A171006821
CP017921
Euryarchaeota
Methanohalophilus halophilus Z-7982 [CP017921]
404217
404143
-
His
GTG
-
¡û
>WENV180345400
OBLN01000025
[OBLN] sediment metagenome; sediment
23574
23648
+
His
GTG
[ENA]
¢þ
>WENV170014884
AZIC01002276
[AZIC] marine sediment metagenome; sample MGS-MES from oil contaminated site at the harbour of Messina (Sicily, Italy)
2436
2362
-
His
GTG
[ENA]
¢þ
>At0974
CP000300
Euryarchaeota
Methanococcoides burtonii DSM 6242 [CP000300]
2212067
2212141
+
His
GTG
[Ensembl]
¡û
>WENV170693038
LGOV01068238
[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge
1
75
+
His
GTG
[ENA]
¢þ
>WENV170694629
LGVD01163632
[LGVD] marine sediment metagenome; sample #3730, Push core (PC) 16 from cruise R/V Atlantis leg AT-15-68, Alvin dive 4635 at
139
65
-
His
GTG
[ENA]
¢þ
>W1910228306
FNMU01000001
Euryarchaeota
Methanohalophilus halophilus Z-7982 [FNMU]
218437
218363
-
His
GTG
[ENA]
¡û
>W1910229842
FOHQ01000002
Euryarchaeota
Methanococcoides vulcani SLH 33 [FOHQ]
245995
246069
+
His
GTG
[ENA]
¡û
>W1910471796
FXBN01000001
Euryarchaeota
Methanohalophilus portucalensis FDF-1 [FXBN]
755102
755028
-
His
GTG
[ENA]
¡û
>W1910575260
JRHO01000009
Euryarchaeota
Methanococcoides methylutens DSM 2657 [JRHO]
326577
326651
+
His
GTG
[ENA]
¡û
>W1910582965
JWTK01000002
Euryarchaeota
Methanohalophilus portucalensis FDF-1 [JWTK]
254869
254943
+
His
GTG
[ENA]
¡û
>W1910672534
MCNQ01000002
Euryarchaeota
Methanohalophilus sp. 2-GBenrich [MCNQ]
138404
138478
+
His
GTG
[ENA]
¡û
>W1911492142
OBDR01000010
Euryarchaeota
Methanohalophilus euhalobius WG-1MB [OBDR]
38651
38577
-
His
GTG
[ENA]
¡û
>W1911581828
PGGK01000010
Euryarchaeota
Methanolobus halotolerans SY-01 [PGGK]
85008
84934
-
His
GTG
[ENA]
¡û
>W1911633773
PVBU01000008
Euryarchaeota
Methanohalophilus euhalobius DSM 10369 [PVBU]
43301
43375
+
His
GTG
[ENA]
¡û
>W1911653217
QBKB01000002
Euryarchaeota
Methanohalophilus profundi SLHTYRO [QBKB]
813111
813037
-
His
GTG
[ENA]
¡û
>W1610000141
AADH02000010
Euryarchaeota
Methanococcoides burtonii DSM 6242 [AADH]
56881
56955
+
His
GTG
[ENA]
¡û
>W1610919885
LSRU01000180
Euryarchaeota
Methanohalophilus sp. T328-1 [LSRU]
1035
961
-
His
GTG
[ENA]
¡û
>W1610919889
LSRU01000221
Euryarchaeota
Methanohalophilus sp. T328-1 [LSRU]
2017
2091
+
His
GTG
[ENA]
¡û
>W1610919900
LSRV01000011
Euryarchaeota
Methanolobus sp. T82-4 [LSRV]
26115
26189
+
His
GTG
[ENA]
¡û
>W1611052487
MAFX01000004
Euryarchaeota
Methanohalophilus sp. DAL1 [MAFX]
23213
23139
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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