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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.413357 (20 seq.)
>A171002730
CP003050
Euryarchaeota
Halovivax ruber XH-70 [CP003050]
557856
557785
-
Thr
GGT
-
¡û
>A171006704
CP016070
Euryarchaeota
Halodesulfurarchaeum formicicum HTSR1 [CP016070]
1855239
1855168
-
Thr
GGT
-
¡û
>A171006854
CP019067
Euryarchaeota
Halorientalis sp. IM1011 [CP019067]
1512002
1512074
+
Thr
GGT
-
¡û
>A171007140
FR746099
Euryarchaeota
Haloquadratum walsbyi C23 DSM 16854 [FR746099]
96288
96359
+
Thr
GGT
-
¡û
>ENV08001800
ABOG01003559
saltern metagenome; microbial fraction from medium salinity saltern in San Diego, CA
23
95
+
Thr
GGT
[ENA]
¡û
>ENV08001802
ABOG01004685
saltern metagenome; microbial fraction from medium salinity saltern in San Diego, CA
117
45
-
Thr
GGT
[ENA]
¡û
>WENV170008990
APHM01018269
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
1899
1828
-
Thr
GGT
[ENA]
¢þ
>WENV170009002
APHM01019562
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
1425
1353
-
Thr
GGT
[ENA]
¢þ
>WENV170009009
APHM01020127
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
573
647
+
Thr
GGT
[ENA]
¢þ
>WENV170009159
APHM01021481
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
93345
93417
+
Thr
GGT
[ENA]
¢þ
>WENV170009231
APHM01021794
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
33198
33269
+
Thr
GGT
[ENA]
¢þ
>At0843
AM180088
Euryarchaeota
Haloquadratum walsbyi DSM 16790 DSM 16790 [AM180088]
97527
97598
+
Thr
GGT
[Ensembl]
¡û
>WENV170661299
JXWU01153629
[JXWU] soil metagenome; rice field; organic control Plot
479
405
-
Thr
GGT
[ENA]
¢þ
>W1910226753
FNBK01000013
Euryarchaeota
Halorientalis regularis IBRC-M 10760 [FNBK]
43591
43663
+
Thr
GGT
[ENA]
¡û
>W1610019074
ARPX01000124
Euryarchaeota
Haloquadratum walsbyi J07HQW1 [ARPX]
1425
1353
-
Thr
GGT
[ENA]
¡û
>W1610019115
ARPY01000072
Euryarchaeota
Haloquadratum walsbyi J07HQW2 [ARPY]
1371
1299
-
Thr
GGT
[ENA]
¡û
>W1610019116
ARPY01000119
Euryarchaeota
Haloquadratum walsbyi J07HQW2 [ARPY]
811
739
-
Thr
GGT
[ENA]
¡û
>W1610019143
ARPY01000170
Euryarchaeota
Haloquadratum walsbyi J07HQW2 [ARPY]
947
873
-
Thr
GGT
[ENA]
¡û
>W1610083013
CBMB010000003
Euryarchaeota
Halopiger goleimassiliensis IIH3 [CBMB]
493315
493244
-
Thr
GGT
[ENA]
¡û
>ENV004069
DQ314494
Environmental sample from ENV division of INSDC
6102
6028
-
Thr
GGT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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