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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.413438 (36 seq.)
>W1710860325
LMCU01000001
Actinomycetota
Leifsonia sp. Root112D2 [LMCU]
1980882
1980954
+
Gln
TTG
[ENA]
¡û
>W1710874714
LMNV01000003
Actinomycetota
Frondihabitans sp. Leaf304 [LMNV]
436858
436786
-
Gln
TTG
[ENA]
¡û
>W1710876135
LMOZ01000001
Actinomycetota
Leifsonia sp. Leaf336 [LMOZ]
1008932
1009006
+
Gln
TTG
[ENA]
¡û
>W1710921151
LNZG01000001
Actinomycetota
Leifsonia xyli subsp. xyli [LNZG]
297570
297644
+
Gln
TTG
[ENA]
¡û
>W131162278
AQYK01000002
Actinomycetota
Leifsonia sp. 109 [AQYK]
567837
567763
-
Gln
TTG
[ENA]
¡û
>W131184652
ARTB01000004
Actinomycetota
Cryocola sp. 340MFSha3.1 [ARTB]
161471
161545
+
Gln
TTG
[ENA]
¡û
>W1711505312
MKVJ01000023
Actinomycetota
Leifsonia sp. 71-9 [MKVJ]
30750
30822
+
Gln
TTG
[ENA]
¡û
>C171111578
CP020715
Actinomycetota
Cnuibacter physcomitrellae [CP020715]
1271540
1271615
+
Gln
TTG
-
¡û
>C012831
AE016822
Actinomycetota
Leifsonia xyli subsp. xyli str. CTCB07 [AE016822]
1810965
1810891
-
Gln
TTG
[Ensembl]
¡û
>WENV180016198
FSUF01000331
[FSUF] metagenome; soil
1606
1532
-
Gln
TTG
[ENA]
¢þ
>WENV180018350
FSYX01000191
[FSYX] metagenome; soil
1192
1264
+
Gln
TTG
[ENA]
¢þ
>WENV180018939
FTBD01000031
[FTBD] metagenome; soil
1228
1302
+
Gln
TTG
[ENA]
¢þ
>WENV180026284
FTIT01000904
[FTIT] metagenome; soil
22662
22736
+
Gln
TTG
[ENA]
¢þ
>WENV180027155
FTIW01494020
[FTIW] metagenome; soil
89
161
+
Gln
TTG
[ENA]
¢þ
>W141146496
AWVQ01000112
Actinomycetota
Leifsonia aquatica ATCC 14665 [AWVQ]
4202
4130
-
Gln
TTG
[ENA]
¡û
>W141188417
AYMR01000018
Actinomycetota
Leifsonia aquatica H1aii [AYMR]
279608
279680
+
Gln
TTG
[ENA]
¡û
>C181196605
CP031192
Actinomycetota
Humibacter sp. BT305 [CP031192]
3155063
3154988
-
Gln
TTG
-
¡û
>C191011698
CP014619
Actinomycetota
Frondihabitans sp. 762G35 [CP014619]
725412
725484
+
Gln
TTG
-
¡û
>C141007919
CP006734
Actinomycetota
Leifsonia xyli subsp. cynodontis DSM 46306 [CP006734]
681615
681539
-
Gln
TTG
[Ensembl]
¡û
>W1911535329
OLMV01000001
Actinomycetota
Microbacterium timonense Marseille-P5731 [OLMV]
1046934
1046862
-
Gln
TTG
[ENA]
¡û
>W1810058087
PDJE01000001
Actinomycetota
Microbacterium agarici DSM 21798 [PDJE]
2828129
2828057
-
Gln
TTG
[ENA]
¡û
>W1810476290
QANL01000002
Actinomycetota
Planctomonas deserti 13S1-3 [QANL]
534313
534385
+
Gln
TTG
[ENA]
¡û
>W1810657150
QJHB01000003
Actinomycetota
Homoserinimonas sp. OAct 916 [QJHB]
103033
103105
+
Gln
TTG
[ENA]
¡û
>W1810684443
QKXI01000002
Actinomycetota
Leifsonia sp. ku-ls [QKXI]
233234
233306
+
Gln
TTG
[ENA]
¡û
>W1510085946
CDWJ01000006
Actinomycetota
Leucobacter sp. 4J7B1 [CDWJ]
24842
24768
-
Gln
TTG
[ENA]
¡û
>W1511524495
JYFC01000001
Actinomycetota
Agreia bicolorata VKM Ac-1804 [JYFC]
676704
676630
-
Gln
TTG
[ENA]
¡û
>W1511691441
LFYU01001560
Actinomycetota
Leifsonia xyli subsp. xyli GXBZ01 [LFYU]
544
618
+
Gln
TTG
[ENA]
¡û
>C161073119
CP014513
Actinomycetota
Frondihabitans sp. PAMC 28766 [CP014513]
1674862
1674936
+
Gln
TTG
[Ensembl]
¡û
>C161076873
CP014761
Actinomycetota
Leifsonia xyli SE134 [CP014761]
1142770
1142698
-
Gln
TTG
[Ensembl]
¡û
>W1610722671
LMCU01000001
Actinomycetota
Leifsonia sp. Root112D2 [LMCU]
1980882
1980954
+
Gln
TTG
[ENA]
¡û
>W1610737060
LMNV01000003
Actinomycetota
Frondihabitans sp. Leaf304 [LMNV]
436858
436786
-
Gln
TTG
[ENA]
¡û
>W1610738481
LMOZ01000001
Actinomycetota
Leifsonia sp. Leaf336 [LMOZ]
1008932
1009006
+
Gln
TTG
[ENA]
¡û
>W1710532036
FNPZ01000003
Actinomycetota
Herbiconiux ginsengi [FNPZ]
269277
269349
+
Gln
TTG
[ENA]
¡û
>W1710540805
FNXD01000011
Actinomycetota
Leifsonia sp. CL154 [FNXD]
31877
31805
-
Gln
TTG
[ENA]
¡û
>W1710568279
FOTM01000011
Actinomycetota
Leifsonia sp. CL147 [FOTM]
31840
31768
-
Gln
TTG
[ENA]
¡û
>W1710602518
FUYG01000011
Actinomycetota
Agreia bicolorata VKM Ac-2052 [FUYG]
83234
83308
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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