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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.413453 (24 seq.)
>W1711055125
LRUI01000014
Gammaproteobacteria
Thalassotalea crassostreae LPB0090 [LRUI]
68953
69027
+
Gln
TTG
[ENA]
¡û
>W1711055126
LRUI01000014
Gammaproteobacteria
Thalassotalea crassostreae LPB0090 [LRUI]
69084
69158
+
Gln
TTG
[ENA]
¡û
>W1711624652
MPHL01000004
Gammaproteobacteria
Colwellia sp. UCD-KL20 [MPHL]
274104
274178
+
Gln
TTG
[ENA]
¡û
>W1711624653
MPHL01000004
Gammaproteobacteria
Colwellia sp. UCD-KL20 [MPHL]
274252
274326
+
Gln
TTG
[ENA]
¡û
>W1711767363
MUZU01000001
Gammaproteobacteria
Pseudocolwellia agarivorans QM50 [MUZU]
686217
686291
+
Gln
TTG
[ENA]
¡û
>W1711767364
MUZU01000001
Gammaproteobacteria
Pseudocolwellia agarivorans QM50 [MUZU]
686365
686439
+
Gln
TTG
[ENA]
¡û
>C171034556
CP014944
Gammaproteobacteria
Colwellia sp. PAMC 20917 [CP014944]
3591796
3591722
-
Gln
TTG
-
¡û
>C171034557
CP014944
Gammaproteobacteria
Colwellia sp. PAMC 20917 [CP014944]
3591619
3591545
-
Gln
TTG
-
¡û
>C171034559
CP014944
Gammaproteobacteria
Colwellia sp. PAMC 20917 [CP014944]
3591275
3591201
-
Gln
TTG
-
¡û
>C171066124
CP017689
Gammaproteobacteria
Thalassotalea crassostreae LPB0090 [CP017689]
1172511
1172437
-
Gln
TTG
-
¡û
>C171066125
CP017689
Gammaproteobacteria
Thalassotalea crassostreae LPB0090 [CP017689]
1172380
1172306
-
Gln
TTG
-
¡û
>WENV182577692
OJGH01001144
[OJGH] seawater metagenome; Sea water
4814
4888
+
Gln
TTG
[ENA]
¢þ
>WENV170781224
MAAB01029734
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
13854
13928
+
Gln
TTG
[ENA]
¢þ
>WENV170781225
MAAB01029734
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
14025
14099
+
Gln
TTG
[ENA]
¢þ
>WENV170783162
MAAC01014539
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
3183
3109
-
Gln
TTG
[ENA]
¢þ
>WENV170783163
MAAC01014539
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
3012
2938
-
Gln
TTG
[ENA]
¢þ
>C191130470
CP034759
Gammaproteobacteria
Litorilituus sediminis JCM 17549 [CP034759]
4157633
4157559
-
Gln
TTG
-
¡û
>C191130471
CP034759
Gammaproteobacteria
Litorilituus sediminis JCM 17549 [CP034759]
4157509
4157435
-
Gln
TTG
-
¡û
>C191160581
CP038493
Gammaproteobacteria
Thalassotalea sp. HSM 43 [CP038493]
3175313
3175239
-
Gln
TTG
-
¡û
>C191160582
CP038493
Gammaproteobacteria
Thalassotalea sp. HSM 43 [CP038493]
3175190
3175116
-
Gln
TTG
-
¡û
>W1911770227
QXIO01000008
Gammaproteobacteria
Colwellia sp. RSH04 [QXIO]
69930
69856
-
Gln
TTG
[ENA]
¡û
>W1911770228
QXIO01000008
Gammaproteobacteria
Colwellia sp. RSH04 [QXIO]
69815
69741
-
Gln
TTG
[ENA]
¡û
>W1610896171
LRUI01000014
Gammaproteobacteria
Thalassotalea crassostreae LPB0090 [LRUI]
68953
69027
+
Gln
TTG
[ENA]
¡û
>W1610896172
LRUI01000014
Gammaproteobacteria
Thalassotalea crassostreae LPB0090 [LRUI]
69084
69158
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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