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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.413478 (43 seq.)
>W131051998
AMYG01000064
Bacillota
Thermoanaerobacter thermohydrosulfuricus WC1 [AMYG]
1612
1685
+
Gln
CTG
[ENA]
¡û
>W131167561
ARDJ01000012
Bacillota
Thermoanaerobacter indiensis BSB-33 [ARDJ]
20109
20036
-
Gln
CTG
[ENA]
¡û
>C025861
AE008691
Bacillota
Caldanaerobacter subterraneus subsp. tengcongensis MB4 [AE008691]
937171
937098
-
Gln
CTG
[Ensembl]
¡û
>w018986
AATV01000048
Bacillota
Thermoanaerobacter sp. X514 X514 [AATV]
297
372
+
Gln
CTG
[ENA]
¡û
>w010207
AAKQ01000074
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 [AAKQ]
2152
2227
+
Gln
CTG
[ENA]
¡û
>W141092612
AVAF01000131
Bacillota
Thermoanaerobacter sp. A7A [AVAF]
12923
12996
+
Gln
CTG
[ENA]
¡û
>WENV181226149
OFDK01000109
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
328
255
-
Gln
CTG
[ENA]
¢þ
>W141153112
AXDC01000003
Bacillota
Caldanaerobacter subterraneus subsp. yonseiensis KB-1 [AXDC]
84488
84415
-
Gln
CTG
[ENA]
¡û
>C08010964
CP000923
Bacillota
Thermoanaerobacter sp. X514 [CP000923]
2110017
2110090
+
Gln
CTG
[Ensembl]
¡û
>C08011056
CP000924
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 ATCC 33223; 39E [CP000924]
1453251
1453324
+
Gln
CTG
[Ensembl]
¡û
>W141276466
JADV01000004
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [JADV]
8282
8355
+
Gln
CTG
[ENA]
¡û
>WENV170675644
LDZP01000175
[LDZP] terrestrial metagenome; oil reservoir sample I1
25166
25239
+
Gln
CTG
[ENA]
¢þ
>WENV170676226
LDZR01001817
[LDZR] terrestrial metagenome; oil reservoir sample K2
25276
25349
+
Gln
CTG
[ENA]
¢þ
>WENV170676901
LDZS01003120
[LDZS] terrestrial metagenome; oil reservoir sample K3
157
84
-
Gln
CTG
[ENA]
¢þ
>C191108142
CP033580
Bacillota
Thermoanaerobacter ethanolicus JW 200 [CP033580]
1492917
1492844
-
Gln
CTG
-
¡û
>W09133530
ACPF01000023
Bacillota
Thermoanaerobacter sp. X513 [ACPF]
413
486
+
Gln
CTG
[ENA]
¡û
>W09134144
ACQZ01000029
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [ACQZ]
156
83
-
Gln
CTG
[ENA]
¡û
>W09135040
ACVH01000004
Bacillota
Thermoanaerobacter italicus Ab9 [ACVH]
55514
55587
+
Gln
CTG
[ENA]
¡û
>W09135147
ACVK01000005
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [ACVK]
15096
15023
-
Gln
CTG
[ENA]
¡û
>W09135839
ACXP01000003
Bacillota
Thermoanaerobacter sp. X561 [ACXP]
12919
12992
+
Gln
CTG
[ENA]
¡û
>C151045335
CP009170
Bacillota
Thermoanaerobacter kivui DSM 2030; LKT-1 [CP009170]
916110
916037
-
Gln
CTG
[Ensembl]
¡û
>W10105937
ACXY01000021
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
25495
25568
+
Gln
CTG
[ENA]
¡û
>W10120497
ADXD01000044
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
4274
4347
+
Gln
CTG
[ENA]
¡û
>C10113417
CP001936
Bacillota
Thermoanaerobacter italicus Ab9 [CP001936]
930585
930512
-
Gln
CTG
[Ensembl]
¡û
>C10113476
CP002032
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [CP002032]
947878
947805
-
Gln
CTG
[Ensembl]
¡û
>W11108260
ACXY01000021
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
25495
25568
+
Gln
CTG
[ENA]
¡û
>W1511275098
JOOI01000001
Bacillota
Thermoanaerobacter sp. YS13 [JOOI]
243674
243601
-
Gln
CTG
[ENA]
¡û
>C11122483
CP002466
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [CP002466]
1445464
1445537
+
Gln
CTG
[Ensembl]
¡û
>C11122739
CP002210
Bacillota
Thermoanaerobacter sp. X513 [CP002210]
844327
844254
-
Gln
CTG
[Ensembl]
¡û
>C11123271
CP002991
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [CP002991]
1053441
1053368
-
Gln
CTG
[Ensembl]
¡û
>W11127106
ADXD01000044
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
4274
4347
+
Gln
CTG
[ENA]
¡û
>W11152640
AEYS01000005
Bacillota
Thermoanaerobacter ethanolicus JW 200 [AEYS]
92202
92275
+
Gln
CTG
[ENA]
¡û
>W121068127
AJUD01000022
Bacillota
Thermoanaerobacter siderophilus SR4 [AJUD]
84651
84724
+
Gln
CTG
[ENA]
¡û
>W1610043689
BAZY01000049
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
7977
8050
+
Gln
CTG
[ENA]
¡û
>W1610612276
LGEO01000012
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
25166
25239
+
Gln
CTG
[ENA]
¡û
>W1610612628
LGEY01000009
Bacillota
Caldanaerobacter subterraneus [LGEY]
25276
25349
+
Gln
CTG
[ENA]
¡û
>W1610613197
LGFN01000224
Bacillota
Caldanaerobacter subterraneus [LGFN]
157
84
-
Gln
CTG
[ENA]
¡û
>W1710040849
BAZY01000049
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
7977
8050
+
Gln
CTG
[ENA]
¡û
>W1710515298
FNBS01000008
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FNBS]
42477
42550
+
Gln
CTG
[ENA]
¡û
>W1710583322
FQUR01000015
Bacillota
Thermoanaerobacter uzonensis DSM 18761 [FQUR]
79563
79490
-
Gln
CTG
[ENA]
¡û
>W1710733782
LGEO01000012
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
25166
25239
+
Gln
CTG
[ENA]
¡û
>W1710733949
LGEY01000009
Bacillota
Caldanaerobacter subterraneus [LGEY]
25276
25349
+
Gln
CTG
[ENA]
¡û
>W1710734404
LGFN01000224
Bacillota
Caldanaerobacter subterraneus [LGFN]
157
84
-
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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