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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.413538 (34 seq.)
>W131006782
AHKL01000032
Bacillota
Brevibacillus brevis FJAT-0809-GLX [AHKL]
362
435
+
Cys
GCA
[ENA]
¡û
>W1710876770
LMPN01000007
Bacillota
Brevibacillus sp. Leaf182 [LMPN]
375
448
+
Cys
GCA
[ENA]
¡û
>W131086508
AOBR01000187
Bacillota
Brevibacillus agri BAB-2500 [AOBR]
2336
2263
-
Cys
GCA
[ENA]
¡û
>W1711168689
LVYG01000037
Bacillota
Brevibacillus brevis [LVYG]
395
468
+
Cys
GCA
[ENA]
¡û
>W1711800069
MXAR01000053
Bacillota
Brevibacillus brevis [MXAR]
13300
13227
-
Cys
GCA
[ENA]
¡û
>W141026730
AKYF01000010
Bacillota
Brevibacillus brevis X23 [AKYF]
2608
2681
+
Cys
GCA
[ENA]
¡û
>W141093464
AVBJ01000001
Bacillota
Bacillus sp. NSP2.1 [AVBJ]
380
453
+
Cys
GCA
[ENA]
¡û
>W141291606
JATL01000106
Bacillota
Brevibacillus agri 5·î2Æü [JATL]
467
540
+
Cys
GCA
[ENA]
¡û
>WENV170583889
FUFK010171838
[FUFK] metagenome; unknown
1101
1028
-
Cys
GCA
[ENA]
¢þ
>C181030584
CP018145
Bacillota
Brevibacillus formosus NF2 [CP018145]
1149464
1149537
+
Cys
GCA
-
¡û
>C181082060
CP023474
Bacillota
Brevibacillus brevis X23 [CP023474]
2315517
2315590
+
Cys
GCA
-
¡û
>C181188450
CP030117
Bacillota
Brevibacillus brevis DZQ7 [CP030117]
2169064
2169137
+
Cys
GCA
-
¡û
>C191041928
CP026363
Bacillota
Brevibacillus agri DSM 6348 [CP026363]
3798222
3798149
-
Cys
GCA
-
¡û
>C191207639
LR134338
Bacillota
Brevibacillus brevis NCTC2611 [LR134338]
3987805
3987732
-
Cys
GCA
-
¡û
>W1910183500
BJNU01000005
Bacillota
Brevibacillus brevis NBRC 15304 [BJNU]
231174
231101
-
Cys
GCA
[ENA]
¡û
>W1910183895
BJOD01000012
Bacillota
Brevibacillus agri NBRC 15538 [BJOD]
278
351
+
Cys
GCA
[ENA]
¡û
>W1910183976
BJOE01000141
Bacillota
Brevibacillus centrosporus NBRC 15540 [BJOE]
7
80
+
Cys
GCA
[ENA]
¡û
>W1910184244
BJOL01000001
Bacillota
Brevibacillus formosus NBRC 15716 [BJOL]
10
83
+
Cys
GCA
[ENA]
¡û
>C09101467
AP008955
Bacillota
Brevibacillus brevis NBRC 100599 [AP008955]
2176708
2176781
+
Cys
GCA
[Ensembl]
¡û
>W1810389849
PXXZ01000006
Bacillota
Brevibacillus brevis NRRL NRS-604 [PXXZ]
384
457
+
Cys
GCA
[ENA]
¡û
>W1810391272
PXZL01000013
Bacillota
Brevibacillus formosus NRRL NRS-863 [PXZL]
331
404
+
Cys
GCA
[ENA]
¡û
>W1810391405
PXZM01000016
Bacillota
Brevibacillus fortis NRRL NRS-1210 [PXZM]
430
503
+
Cys
GCA
[ENA]
¡û
>W1810391474
PXZN01000014
Bacillota
Brevibacillus sp. NRRL NRS-603 [PXZN]
203232
203159
-
Cys
GCA
[ENA]
¡û
>W1810391685
PXZO01000086
Bacillota
Brevibacillus porteri NRRL B-41110 [PXZO]
426
499
+
Cys
GCA
[ENA]
¡û
>W1810658162
QJJD01000034
Bacillota
Brevibacillus laterosporus MG64 [QJJD]
592
665
+
Cys
GCA
[ENA]
¡û
>W1810787357
QRDR01000004
Bacillota
Brevibacillus brevis DSM 30 [QRDR]
467
540
+
Cys
GCA
[ENA]
¡û
>W1511629656
LDCN01000002
Bacillota
Brevibacillus formosus DSM 9885 [LDCN]
76
149
+
Cys
GCA
[ENA]
¡û
>W1511645835
LDZV01000001
Bacillota
Brevibacillus brevis DZQ7 [LDZV]
1617158
1617231
+
Cys
GCA
[ENA]
¡û
>W1511700182
LGJF01000001
Bacillota
Bacillus sp. FJAT-27238 [LGJF]
2473788
2473715
-
Cys
GCA
[ENA]
¡û
>W121085008
AKIX01000060
Bacillota
Brevibacillus sp. BC25 [AKIX]
261
334
+
Cys
GCA
[ENA]
¡û
>W121086588
AKKB01000075
Bacillota
Brevibacillus sp. CF112 [AKKB]
1940
1867
-
Cys
GCA
[ENA]
¡û
>W1610739116
LMPN01000007
Bacillota
Brevibacillus sp. Leaf182 [LMPN]
375
448
+
Cys
GCA
[ENA]
¡û
>W1610978484
LVYG01000037
Bacillota
Brevibacillus brevis [LVYG]
395
468
+
Cys
GCA
[ENA]
¡û
>W1710081150
BDFB01000016
Bacillota
Brevibacillus brevis [BDFB]
178572
178499
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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