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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.413566 (59 seq.)
>W1710861437
LMDP01000002
Alphaproteobacteria
Afipia sp. Root123D2 [LMDP]
379475
379401
-
Gln
TTG
[ENA]
¡û
>W1711073391
LSIM01000196
Alphaproteobacteria
Bradyrhizobium sp. CCH4-A6 [LSIM]
13083
13157
+
Gln
TTG
[ENA]
¡û
>W1711073441
LSIN01000308
Alphaproteobacteria
Bradyrhizobium sp. CCH10-C7 [LSIN]
60421
60347
-
Gln
TTG
[ENA]
¡û
>W131166464
ARCM01000003
Alphaproteobacteria
Ancylobacter sp. FA202 [ARCM]
379545
379619
+
Gln
TTG
[ENA]
¡û
>W131175696
ARJL01000003
Alphaproteobacteria
Xanthobacteraceae bacterium 501b [ARJL]
3106350
3106276
-
Gln
TTG
[ENA]
¡û
>W1711169197
LVYV01000023
Alphaproteobacteria
Tardiphaga robiniae [LVYV]
172911
172837
-
Gln
TTG
[ENA]
¡û
>W131186365
ARWB01000001
Alphaproteobacteria
Methylopila sp. M107 [ARWB]
3299209
3299135
-
Gln
TTG
[ENA]
¡û
>W131186633
ARWG01000001
Alphaproteobacteria
Hyphomicrobium sp. 99 [ARWG]
29746
29672
-
Gln
TTG
[ENA]
¡û
>W1711505871
MKVX01000011
Alphaproteobacteria
Rhizobiales bacterium 62-47 [MKVX]
193981
193907
-
Gln
TTG
[ENA]
¡û
>C018838
CP000463
Alphaproteobacteria
Rhodopseudomonas palustris [CP000463]
1217418
1217492
+
Gln
TTG
[Ensembl]
¡û
>C018887
CP000301
Alphaproteobacteria
Rhodopseudomonas palustris [CP000301]
1260373
1260447
+
Gln
TTG
[Ensembl]
¡û
>W141007430
AGWX01000001
Alphaproteobacteria
Afipia broomeae ATCC 49717 [AGWX]
426732
426806
+
Gln
TTG
[ENA]
¡û
>W141007559
AGWZ01000001
Alphaproteobacteria
Afipia felis ATCC 53690 [AGWZ]
1470704
1470630
-
Gln
TTG
[ENA]
¡û
>WENV180304386
OBJI01017774
[OBJI] soil metagenome; soil
284
358
+
Gln
TTG
[ENA]
¢þ
>WENV180344700
OBLL01122663
[OBLL] soil metagenome; soil
118
44
-
Gln
TTG
[ENA]
¢þ
>WENV180398142
OBPZ01092308
[OBPZ] marine metagenome; ENVO:00002010
80
5
-
Gln
TTG
[ENA]
¢þ
>W141063406
APHQ01000013
Alphaproteobacteria
Afipia sp. OHSU_II-uncloned [APHQ]
288125
288199
+
Gln
TTG
[ENA]
¡û
>W141063736
APJE01000048
Alphaproteobacteria
Afipia sp. OHSU_I-C6 [APJE]
1886
1812
-
Gln
TTG
[ENA]
¡û
>W141063781
APJF01000032
Alphaproteobacteria
Afipia sp. OHSU_I-C4 [APJF]
30447
30521
+
Gln
TTG
[ENA]
¡û
>W141063826
APJG01000034
Alphaproteobacteria
Afipia sp. OHSU_I-uncloned [APJG]
1886
1812
-
Gln
TTG
[ENA]
¡û
>W141063870
APJH01000030
Alphaproteobacteria
Afipia sp. OHSU_II-C2 [APJH]
30526
30600
+
Gln
TTG
[ENA]
¡û
>W141063911
APJI01000022
Alphaproteobacteria
Afipia sp. OHSU_II-C1 [APJI]
30517
30591
+
Gln
TTG
[ENA]
¡û
>W141093625
AVBK01000038
Alphaproteobacteria
Afipia sp. NBIMC_P1-C1 [AVBK]
18534
18460
-
Gln
TTG
[ENA]
¡û
>W141093662
AVBL01000024
Alphaproteobacteria
Afipia sp. NBIMC_P1-C2 [AVBL]
18534
18460
-
Gln
TTG
[ENA]
¡û
>W141093717
AVBM01000044
Alphaproteobacteria
Afipia sp. NBIMC_P1-C3 [AVBM]
28630
28704
+
Gln
TTG
[ENA]
¡û
>W08007850
ABKN01000001
Alphaproteobacteria
Afipia carboxidovorans OM5 [ABKN]
2811848
2811777
-
Gln
TTG
[ENA]
¡û
>W141149761
AWZU01000024
Alphaproteobacteria
Bradyrhizobium sp. ARR65 [AWZU]
30877
30803
-
Gln
TTG
[ENA]
¡û
>W141188885
AYNA01000017
Alphaproteobacteria
Methylocystis sp. SB2 [AYNA]
763
689
-
Gln
TTG
[ENA]
¡û
>W141213990
AZSJ01000004
Alphaproteobacteria
Afipia sp. P52-10 [AZSJ]
360419
360493
+
Gln
TTG
[ENA]
¡û
>W141243621
CAJQ02000044
Alphaproteobacteria
Afipia birgiae 34632 [CAJQ]
120505
120431
-
Gln
TTG
[ENA]
¡û
>W141278844
JAFV01000001
Alphaproteobacteria
Methylopila sp. 73B [JAFV]
78358
78284
-
Gln
TTG
[ENA]
¡û
>WENV183636530
OOKD01062056
[OOKD] human gut metagenome; Skin biopsy
305
231
-
Gln
TTG
[ENA]
¢þ
>WENV183662675
ORJL010215438
[ORJL] groundwater metagenome; groundwater
430
356
-
Gln
TTG
[ENA]
¢þ
>WENV170551264
CXWJ01002564
[CXWJ] wastewater metagenome; activated sludge
1858
1784
-
Gln
TTG
[ENA]
¢þ
>WENV170706887
LNAP01008366
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
7009
7083
+
Gln
TTG
[ENA]
¢þ
>WENV170709222
LNFM01000199
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
14621
14547
-
Gln
TTG
[ENA]
¢þ
>WENV170714999
LNFM01123740
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1121
1047
-
Gln
TTG
[ENA]
¢þ
>W09103889
AALA01000021
Alphaproteobacteria
Rhodopseudomonas palustris BisA53 [AALA]
73241
73167
-
Gln
TTG
[ENA]
¡û
>W09104416
AALR01000006
Alphaproteobacteria
Rhodopseudomonas palustris BisB18 [AALR]
196775
196701
-
Gln
TTG
[ENA]
¡û
>W141733734
JNLC01000010
Alphaproteobacteria
Bosea sp. 117 [JNLC]
191315
191389
+
Gln
TTG
[ENA]
¡û
>W1910006618
BAUX01000005
Alphaproteobacteria
Methylopila sp. Yamaguchi [BAUX]
113744
113818
+
Gln
TTG
[ENA]
¡û
>C09108149
CP001196
Alphaproteobacteria
Afipia carboxidovorans OM5 OM5; ATCC 49405 [CP001196]
2811534
2811460
-
Gln
TTG
-
¡û
>W1910548969
FZOX01000004
Alphaproteobacteria
Tardiphaga sp. OK246 [FZOX]
461988
461914
-
Gln
TTG
[ENA]
¡û
>W1810368601
PVZS01000015
Alphaproteobacteria
Alsobacter soli SH9 [PVZS]
26257
26331
+
Gln
TTG
[ENA]
¡û
>W1810576964
QENW01000009
Alphaproteobacteria
Tardiphaga sp. OV697 [QENW]
115880
115806
-
Gln
TTG
[ENA]
¡û
>W1810658584
QJJK01000004
Alphaproteobacteria
Chelatococcus asaccharovorans DSM 6462 [QJJK]
86335
86261
-
Gln
TTG
[ENA]
¡û
>W10110049
ADBQ01000001
Alphaproteobacteria
Ancylobacter novellus DSM 506 [ADBQ]
976584
976510
-
Gln
TTG
[ENA]
¡û
>C10112182
CP002026
Alphaproteobacteria
Ancylobacter novellus DSM 506 [CP002026]
271936
272010
+
Gln
TTG
[Ensembl]
¡û
>W11112486
ADBQ01000001
Alphaproteobacteria
Ancylobacter novellus DSM 506 [ADBQ]
976584
976510
-
Gln
TTG
[ENA]
¡û
>C11116259
CP002821
Alphaproteobacteria
Afipia carboxidovorans OM4 [CP002821]
1314032
1314106
+
Gln
TTG
[Ensembl]
¡û
>W1511517245
JXXE01000054
Alphaproteobacteria
Rhodopseudomonas palustris BAL398 [JXXE]
5415
5489
+
Gln
TTG
[ENA]
¡û
>W1511591990
LBIA01000001
Alphaproteobacteria
Afipia massiliensis LC387 [LBIA]
3494198
3494272
+
Gln
TTG
[ENA]
¡û
>C121002979
CP002826
Alphaproteobacteria
Afipia carboxidovorans OM5 [CP002826]
1312895
1312969
+
Gln
TTG
-
¡û
>W1610723783
LMDP01000002
Alphaproteobacteria
Afipia sp. Root123D2 [LMDP]
379475
379401
-
Gln
TTG
[ENA]
¡û
>W1610912696
LSIM01000196
Alphaproteobacteria
Bradyrhizobium sp. CCH4-A6 [LSIM]
13083
13157
+
Gln
TTG
[ENA]
¡û
>W1610912746
LSIN01000308
Alphaproteobacteria
Bradyrhizobium sp. CCH10-C7 [LSIN]
60421
60347
-
Gln
TTG
[ENA]
¡û
>W1610978992
LVYV01000023
Alphaproteobacteria
Tardiphaga robiniae [LVYV]
172911
172837
-
Gln
TTG
[ENA]
¡û
>W1710505305
FMTP01000002
Alphaproteobacteria
Ancylobacter rudongensis [FMTP]
380357
380283
-
Gln
TTG
[ENA]
¡û
>W1710540648
FNWZ01000001
Alphaproteobacteria
Tardiphaga sp. OK245 [FNWZ]
1013912
1013986
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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