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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.413574 (13 seq.)
>WENV180632067
OCQY01163859
[OCQY] human gut metagenome; human gut
157
230
+
Gln
CTG
[ENA]
¢þ
>W141088577
AUVG01000036
Bacillota
[Clostridium] cellulosi CS-4-4 [AUVG]
31918
31845
-
Gln
CTG
[ENA]
¡û
>WENV180965784
ODUP01008907
[ODUP] human metagenome; G_DNA_Stool
1717
1644
-
Gln
CTG
[ENA]
¢þ
>WENV183089820
OLJW01018764
[OLJW] human gut metagenome; human gut
459
532
+
Gln
CTG
[ENA]
¢þ
>C181115584
CP025286
Bacillota
Ethanoligenens harbinense YUAN-3 [CP025286]
1298656
1298583
-
Gln
CTG
-
¡û
>C191031587
CP025287
Bacillota
Ethanoligenens harbinense B49 [CP025287]
1263817
1263744
-
Gln
CTG
-
¡û
>C191031642
CP025288
Bacillota
Ethanoligenens harbinense X-29 [CP025288]
1298586
1298513
-
Gln
CTG
-
¡û
>C191072253
CP030278
Bacillota
Ethanoligenens harbinense W1 [CP030278]
1298653
1298580
-
Gln
CTG
-
¡û
>C151102751
LM995447
Bacillota
[Clostridium] cellulosi [LM995447]
2004902
2004829
-
Gln
CTG
[Ensembl]
¡û
>W10115310
ADJQ01000035
Bacillota
Ethanoligenens harbinense YUAN-3 [ADJQ]
15437
15510
+
Gln
CTG
[ENA]
¡û
>C11108780
CP002400
Bacillota
Ethanoligenens harbinense YUAN-3 [CP002400]
1298654
1298581
-
Gln
CTG
[Ensembl]
¡û
>W11118896
ADJQ01000035
Bacillota
Ethanoligenens harbinense YUAN-3 [ADJQ]
15437
15510
+
Gln
CTG
[ENA]
¡û
>WENV084414
BAAZ01024930
Gut microbiome of Human (healthy human sample F2-X, Child, Male)
500
427
-
Gln
CTG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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