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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.413602 (63 seq.)
>W1710806107
LKAQ01000001
Thermodesulfobacteriota
Pseudodesulfovibrio hydrargyri dechloracetivorans [LKAQ]
260693
260619
-
Cys
GCA
[ENA]
¡û
>W131182223
ARQF01000016
Thermodesulfobacteriota
Halodesulfovibrio aestuarii subsp. aestuarii DSM 17919 = ATCC 29578 [ARQF]
97920
97994
+
Cys
GCA
[ENA]
¡û
>W131182225
ARQF01000016
Thermodesulfobacteriota
Halodesulfovibrio aestuarii subsp. aestuarii DSM 17919 = ATCC 29578 [ARQF]
98102
98176
+
Cys
GCA
[ENA]
¡û
>W1711317493
MAXI01000107
Thermodesulfobacteriota
Desulfovibrio sp. S3730MH75 [MAXI]
2576
2502
-
Cys
GCA
[ENA]
¡û
>W131099192
AOSV01000012
Thermodesulfobacteriota
Desulfocurvibacter africanus PCS [AOSV]
142509
142435
-
Cys
GCA
[ENA]
¡û
>W131160982
AQXE01000001
Thermodesulfobacteriota
Desulfovibrio oxyclinae DSM 11498 [AQXE]
318463
318537
+
Cys
GCA
[ENA]
¡û
>W131208371
ATHI01000006
Thermodesulfobacteriota
Alkalidesulfovibrio alkalitolerans DSM 16529 [ATHI]
51166
51092
-
Cys
GCA
[ENA]
¡û
>W131208462
ATHV01000019
Thermodesulfobacteriota
Desulfovibrio sp. X2 [ATHV]
109257
109183
-
Cys
GCA
[ENA]
¡û
>W131222861
AUBP01000016
Thermodesulfobacteriota
Desulfovibrio inopinatus DSM 10711 [AUBP]
17321
17247
-
Cys
GCA
[ENA]
¡û
>W131224573
AUCX01000012
Thermodesulfobacteriota
Maridesulfovibrio bastinii DSM 16055 [AUCX]
35494
35568
+
Cys
GCA
[ENA]
¡û
>W131224768
AUDB01000001
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [AUDB]
583720
583794
+
Cys
GCA
[ENA]
¡û
>W131224828
AUDC01000007
Thermodesulfobacteriota
Maridesulfovibrio zosterae DSM 11974 [AUDC]
32133
32207
+
Cys
GCA
[ENA]
¡û
>W131236059
AULZ01000015
Thermodesulfobacteriota
Desulfocurvibacter africanus DSM 2603 [AULZ]
95225
95151
-
Cys
GCA
[ENA]
¡û
>W131236081
AUMA01000003
Thermodesulfobacteriota
Desulfovibrio aminophilus DSM 12254 [AUMA]
61733
61807
+
Cys
GCA
[ENA]
¡û
>WENV180205863
OBAH01148247
[OBAH] human gut metagenome; human gut
169
243
+
Cys
GCA
[ENA]
¢þ
>WENV180297650
OBJA01057676
[OBJA] soil metagenome; sediment, water from around vicinity
181
107
-
Cys
GCA
[ENA]
¢þ
>W141028002
ALAO01000285
Thermodesulfobacteriota
Solidesulfovibrio magneticus str. Maddingley MBC34 [ALAO]
16213
16139
-
Cys
GCA
[ENA]
¡û
>WENV180534568
OCHM01018588
[OCHM] human gut metagenome; human gut
79
5
-
Cys
GCA
[ENA]
¢þ
>WENV181909225
OGYB01029643
[OGYB] human gut metagenome; faeces
862
936
+
Cys
GCA
[ENA]
¢þ
>W141201055
AZAO01000002
Thermodesulfobacteriota
Nitratidesulfovibrio termitidis HI1 [AZAO]
14769
14695
-
Cys
GCA
[ENA]
¡û
>WENV182732031
OJQA01023047
[OJQA] human gut metagenome; stool sample
721
795
+
Cys
GCA
[ENA]
¢þ
>W141277869
JAEX01000007
Thermodesulfobacteriota
Desulfocurvus vexinensis DSM 17965 [JAEX]
116692
116766
+
Cys
GCA
[ENA]
¡û
>WENV183513482
OMKS01005350
[OMKS] sediment metagenome; hot spring sediment
7464
7536
+
Cys
GCA
[ENA]
¢þ
>WENV183706868
PDWI01005781
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
15570
15644
+
Cys
GCA
[ENA]
¢þ
>WENV183721804
PDWJ01088312
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
20
94
+
Cys
GCA
[ENA]
¢þ
>WENV183746853
PPCM01000024
[PPCM] marine sediment metagenome; marine sediment
108
182
+
Cys
GCA
[ENA]
¢þ
>WENV183747498
PPCM01003486
[PPCM] marine sediment metagenome; marine sediment
4275
4349
+
Cys
GCA
[ENA]
¢þ
>WENV170418653
CEUM01058685
[CEUM] marine metagenome genome assembly TARA_123_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
126
52
-
Cys
GCA
[ENA]
¢þ
>WENV170437543
CEUU01047616
[CEUU] marine metagenome genome assembly TARA_122_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
128
54
-
Cys
GCA
[ENA]
¢þ
>WENV170715173
LNQE01000221
[LNQE] hydrocarbon metagenome; hydrocarbon-contaminated ditch
2172
2246
+
Cys
GCA
[ENA]
¢þ
>WENV170901445
MDTD01170735
[MDTD] marine metagenome; seawater
31344
31418
+
Cys
GCA
[ENA]
¢þ
>C181226968
LT907975
Thermodesulfobacteriota
Pseudodesulfovibrio profundus 500-1 [LT907975]
144310
144384
+
Cys
GCA
-
¡û
>W09112331
ABXU01000002
Thermodesulfobacteriota
Desulfovibrio piger ATCC 29098 [ABXU]
9656
9582
-
Cys
GCA
[ENA]
¡û
>W09117983
ACCN01000003
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [ACCN]
98255
98329
+
Cys
GCA
[ENA]
¡û
>W141731352
JNJA01000005
Thermodesulfobacteriota
Solidesulfovibrio alcoholivorans DSM 5433 [JNJA]
179573
179499
-
Cys
GCA
[ENA]
¡û
>W141776899
JOMJ01000003
Thermodesulfobacteriota
Desulfohalovibrio reitneri L21-Syr-AB [JOMJ]
487390
487316
-
Cys
GCA
[ENA]
¡û
>W141779016
JONL01000006
Thermodesulfobacteriota
Maridesulfovibrio frigidus DSM 17176 [JONL]
269832
269758
-
Cys
GCA
[ENA]
¡û
>C09104250
CP001649
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [CP001649]
2862825
2862751
-
Cys
GCA
[Ensembl]
¡û
>C09104427
CP001197
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris [CP001197]
9805
9731
-
Cys
GCA
[Ensembl]
¡û
>C141011934
FO203519
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis [FO203519]
3125135
3125061
-
Cys
GCA
-
¡û
>W1910547823
FZOC01000001
Thermodesulfobacteriota
Humidesulfovibrio mexicanus DSM 13116 [FZOC]
310750
310676
-
Cys
GCA
[ENA]
¡û
>W1911738007
QTZO01000004
Thermodesulfobacteriota
Pseudodesulfovibrio sp. S3 [QTZO]
198525
198599
+
Cys
GCA
[ENA]
¡û
>W1510021731
BCAG01000003
Thermodesulfobacteriota
Desulfatitalea tepidiphila S28bF [BCAG]
368477
368551
+
Cys
GCA
[ENA]
¡û
>W10111394
ADDI01000025
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [ADDI]
34988
34914
-
Cys
GCA
[ENA]
¡û
>W10126145
AECZ01000051
Thermodesulfobacteriota
Solidesulfovibrio fructosivorans JJ [AECZ]
8667
8593
-
Cys
GCA
[ENA]
¡û
>C11106873
CP002431
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [CP002431]
2121259
2121185
-
Cys
GCA
[Ensembl]
¡û
>W11114337
ADDI01000025
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [ADDI]
34988
34914
-
Cys
GCA
[ENA]
¡û
>W11133406
AECZ01000051
Thermodesulfobacteriota
Solidesulfovibrio fructosivorans JJ [AECZ]
8667
8593
-
Cys
GCA
[ENA]
¡û
>W1511564376
LADR01000054
Thermodesulfobacteriota
Desulfatitalea sp. BRH_c12 [LADR]
26960
26886
-
Cys
GCA
[ENA]
¡û
>W11149113
AEUJ01000002
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [AEUJ]
127691
127617
-
Cys
GCA
[ENA]
¡û
>W11162707
AFHE01000002
Thermodesulfobacteriota
Desulfocurvibacter africanus str. Walvis Bay [AFHE]
3567449
3567523
+
Cys
GCA
[ENA]
¡û
>W11178846
AGFG01000070
Thermodesulfobacteriota
Desulfovibrio sp. A2 [AGFG]
71042
70968
-
Cys
GCA
[ENA]
¡û
>C121009007
CP003220
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [CP003220]
785366
785292
-
Cys
GCA
[Ensembl]
¡û
>C121009043
CP003221
Thermodesulfobacteriota
Desulfocurvibacter africanus subsp. africanus str. Walvis Bay [CP003221]
4191802
4191876
+
Cys
GCA
[Ensembl]
¡û
>C161068249
CP014206
Thermodesulfobacteriota
Pseudodesulfovibrio indicus J2 [CP014206]
2412891
2412965
+
Cys
GCA
[Ensembl]
¡û
>W1610046122
BBCC01000159
Thermodesulfobacteriota
Desulfosarcina cetonica JCM 12296 [BBCC]
4585
4511
-
Cys
GCA
[ENA]
¡û
>W121036488
AHMC01000022
Thermodesulfobacteriota
Desulfovibrio sp. U5L [AHMC]
7890
7964
+
Cys
GCA
[ENA]
¡û
>C131017904
FO203427
Thermodesulfobacteriota
Pseudodesulfovibrio piezophilus C1TLV30 type strain: C1TLV30 [FO203427]
111191
111265
+
Cys
GCA
[Ensembl]
¡û
>C131018116
FO203522
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [FO203522]
3125135
3125061
-
Cys
GCA
[Ensembl]
¡û
>W1710042918
BBCC01000159
Thermodesulfobacteriota
Desulfosarcina cetonica JCM 12296 [BBCC]
4585
4511
-
Cys
GCA
[ENA]
¡û
>W1710520967
FNGA01000002
Thermodesulfobacteriota
Maridesulfovibrio ferrireducens [FNGA]
182547
182473
-
Cys
GCA
[ENA]
¡û
>W1710602173
FUYA01000001
Thermodesulfobacteriota
Desulfobaculum bizertense DSM 18034 [FUYA]
566782
566708
-
Cys
GCA
[ENA]
¡û
>W1710607158
FWZU01000006
Thermodesulfobacteriota
Desulfovibrio gilichinskyi K3S [FWZU]
112481
112407
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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