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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.413660 (24 seq.)
>W131227763
AUFK01000016
Bacteroidota
Epilithonimonas caeni DSM 17710 [AUFK]
124336
124263
-
Gln
TTG
[ENA]
¡û
>W141291528
JASZ01000011
Bacteroidota
Kaistella haifensis DSM 19056 [JASZ]
38277
38206
-
Gln
TTG
[ENA]
¡û
>WENV183727058
PJTO01003038
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
2022
1951
-
Gln
TTG
[ENA]
¢þ
>WENV183728904
PJTQ01001061
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
8420
8491
+
Gln
TTG
[ENA]
¢þ
>WENV183733857
PJTY01038245
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
78
149
+
Gln
TTG
[ENA]
¢þ
>WENV183738310
PJUD01158612
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
246
175
-
Gln
TTG
[ENA]
¢þ
>WENV183740541
PJUF01003249
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
413
342
-
Gln
TTG
[ENA]
¢þ
>C191116475
CP033933
Bacteroidota
Kaistella haifensis G0079 [CP033933]
1091939
1091868
-
Gln
TTG
-
¡û
>C191120502
CP034160
Bacteroidota
Epilithonimonas vandammei H6466 [CP034160]
1159332
1159403
+
Gln
TTG
-
¡û
>C191120571
CP034161
Bacteroidota
Epilithonimonas vandammei F5649 [CP034161]
2523245
2523174
-
Gln
TTG
-
¡û
>C191156071
CP037954
Bacteroidota
Chryseobacterium salivictor NBC 122 [CP037954]
1220885
1220814
-
Gln
TTG
-
¡û
>C09106234
CP001673
Bacteroidota
Flavobacteriaceae bacterium 3519-10 [CP001673]
234208
234137
-
Gln
TTG
[Ensembl]
¡û
>W1910933644
NIUY01000001
Bacteroidota
Chryseobacterium sp. VAUSW3 [NIUY]
581873
581944
+
Gln
TTG
[ENA]
¡û
>W1911701324
QNUG01000015
Bacteroidota
Epilithonimonas hispanica KCTC 22104 [QNUG]
91894
91823
-
Gln
TTG
[ENA]
¡û
>W1511390835
JSYK01000002
Bacteroidota
Kaistella solincola DSM 22468 [JSYK]
301825
301898
+
Gln
TTG
[ENA]
¡û
>W1610095117
CYUH01000015
Bacteroidota
Chryseobacterium senegalense FF12 [CYUH]
217201
217130
-
Gln
TTG
[ENA]
¡û
>W1710097912
CYUH01000015
Bacteroidota
Chryseobacterium senegalense FF12 [CYUH]
217201
217130
-
Gln
TTG
[ENA]
¡û
>W1710514896
FNBH01000002
Bacteroidota
Epilithonimonas hungarica hungaricum [FNBH]
223895
223822
-
Gln
TTG
[ENA]
¡û
>W1710540587
FNWX01000071
Bacteroidota
Epilithonimonas hominis [FNWX]
4059
4132
+
Gln
TTG
[ENA]
¡û
>W1710565952
FORQ01000003
Bacteroidota
Kaistella treverensis treverense [FORQ]
6116
6043
-
Gln
TTG
[ENA]
¡û
>W1710589864
FRAM01000001
Bacteroidota
Epilithonimonas mollis molle [FRAM]
532930
532859
-
Gln
TTG
[ENA]
¡û
>W1710594708
FSRK01000001
Bacteroidota
Epilithonimonas zeae [FSRK]
464237
464308
+
Gln
TTG
[ENA]
¡û
>W1710600200
FTPU01000050
Bacteroidota
Epilithonimonas bovis DSM 19482 [FTPU]
500
427
-
Gln
TTG
[ENA]
¡û
>W1710603351
FUYZ01000002
Bacteroidota
Soonwooa buanensis [FUYZ]
119850
119777
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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