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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.413676 (60 seq.)
>W1710876947
LMPR01000015
Bacillota
Exiguobacterium sp. Leaf187 [LMPR]
571
499
-
Trp
CCA
[ENA]
¡û
>W1710877105
LMPV01000001
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
76579
76651
+
Trp
CCA
[ENA]
¡û
>W1710909381
LNQL01000002
Bacillota
Exiguobacterium enclense [LNQL]
1196
1268
+
Trp
CCA
[ENA]
¡û
>W1711116992
LUCU01000022
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
774375
774303
-
Trp
CCA
[ENA]
¡û
>W1711166803
LVVL01000001
Bacillota
Exiguobacterium undae [LVVL]
1982885
1982813
-
Trp
CCA
[ENA]
¡û
>W131202759
ASXD01000105
Bacillota
Exiguobacterium sp. S17 [ASXD]
833
905
+
Trp
CCA
[ENA]
¡û
>W131205111
ATCL01000011
Bacillota
Exiguobacterium chiriqhucha RW2 [ATCL]
443
514
+
Trp
CCA
[ENA]
¡û
>W1711257008
LYTG01000087
Bacillota
Exiguobacterium sp. SH31 [LYTG]
7
79
+
Trp
CCA
[ENA]
¡û
>W131241564
BARY01000009
Bacillota
Exiguobacterium sp. OS-77 [BARY]
928366
928294
-
Trp
CCA
[ENA]
¡û
>W1711507270
MKXO01000001
Bacillota
Exiguobacterium aurantiacum [MKXO]
1157819
1157747
-
Trp
CCA
[ENA]
¡û
>W1711589645
MOEL01000005
Bacillota
Exiguobacterium sp. AT1b [MOEL]
942
1014
+
Trp
CCA
[ENA]
¡û
>W1711603297
MOLV01000045
Bacillota
Exiguobacterium sp. KRL4 [MOLV]
648
576
-
Trp
CCA
[ENA]
¡û
>W1711632639
MPSZ01000001
Bacillota
Exiguobacterium indicum HHS 31 [MPSZ]
806
878
+
Trp
CCA
[ENA]
¡û
>W1711676363
MRSV01000001
Bacillota
Exiguobacterium profundum [MRSV]
2620772
2620700
-
Trp
CCA
[ENA]
¡û
>W1711713105
MTCT01000008
Bacillota
Exiguobacterium sp. HVEsp1 [MTCT]
2020
2092
+
Trp
CCA
[ENA]
¡û
>W1712017227
NESR01000001
Bacillota
Kurthia gibsonii [NESR]
686
758
+
Trp
CCA
[ENA]
¡û
>C171040555
CP015731
Bacillota
Exiguobacterium sp. U13-1 [CP015731]
1162676
1162748
+
Trp
CCA
-
¡û
>C171072136
CP018057
Bacillota
Exiguobacterium sp. ZWU0009 [CP018057]
724028
724100
+
Trp
CCA
-
¡û
>w003637
AADW02000003
Bacillota
Exiguobacterium sibiricum 255-15 [AADW]
279617
279542
-
Trp
CCA
[ENA]
¡û
>W08009422
ABPF01000072
Bacillota
Exiguobacterium sp. AT1b [ABPF]
2658
2586
-
Trp
CCA
[ENA]
¡û
>C08004809
CP001022
Bacillota
Exiguobacterium sibiricum 255-15 [CP001022]
704622
704694
+
Trp
CCA
[Ensembl]
¡û
>WENV170022533
BCQK01018547
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
486
558
+
Trp
CCA
[ENA]
¢þ
>W141484755
JFYW01000001
Bacillota
Exiguobacterium sp. RIT341 [JFYW]
1687527
1687455
-
Trp
CCA
[ENA]
¡û
>C191181516
CP040676
Bacillota
Exiguobacterium mexicanum A-EM [CP040676]
2073533
2073462
-
Trp
CCA
-
¡û
>W141563070
JHZS01000002
Bacillota
Exiguobacterium sibiricum 7·î3Æü [JHZS]
2090247
2090175
-
Trp
CCA
[ENA]
¡û
>W141563143
JHZT01000003
Bacillota
Exiguobacterium marinum DSM 16307 [JHZT]
2042614
2042542
-
Trp
CCA
[ENA]
¡û
>W141563203
JHZU01000006
Bacillota
Exiguobacterium undae 190-11 [JHZU]
998866
998794
-
Trp
CCA
[ENA]
¡û
>W141563250
JHZV01000005
Bacillota
Exiguobacterium undae DSM 14481 [JHZV]
1001297
1001225
-
Trp
CCA
[ENA]
¡û
>W141620187
JJMW01000033
Bacillota
Exiguobacterium alkaliphilum 12·î1Æü [JJMW]
954
1025
+
Trp
CCA
[ENA]
¡û
>W141701545
JMKS01000005
Bacillota
Exiguobacterium antarcticum DSM 14480 [JMKS]
239441
239513
+
Trp
CCA
[ENA]
¡û
>W141726056
JNAA01000089
Bacillota
Exiguobacterium sp. AB2 [JNAA]
843
914
+
Trp
CCA
[ENA]
¡û
>W141730831
JNIP01000001
Bacillota
Exiguobacterium chiriqhucha GIC31 [JNIP]
2216736
2216665
-
Trp
CCA
[ENA]
¡û
>W141730880
JNIQ01000001
Bacillota
Exiguobacterium aurantiacum DSM 6208 [JNIQ]
2697104
2697032
-
Trp
CCA
[ENA]
¡û
>W141730916
JNIR01000001
Bacillota
Exiguobacterium acetylicum DSM 20416 [JNIR]
283085
283157
+
Trp
CCA
[ENA]
¡û
>W141731018
JNIS01000001
Bacillota
Exiguobacterium oxidotolerans JCM 12280 [JNIS]
2287434
2287506
+
Trp
CCA
[ENA]
¡û
>W141807048
JPOD01000001
Bacillota
Exiguobacterium sp. NG55 [JPOD]
225785
225857
+
Trp
CCA
[ENA]
¡û
>C141009939
CP006866
Bacillota
Exiguobacterium sp. MH3 [CP006866]
677900
677972
+
Trp
CCA
[Ensembl]
¡û
>C09106154
CP001615
Bacillota
Exiguobacterium sp. AT1b [CP001615]
2381132
2381204
+
Trp
CCA
[Ensembl]
¡û
>W1911770657
QXJB01000001
Bacillota
Exiguobacterium sp. RIT452 [QXJB]
658
730
+
Trp
CCA
[ENA]
¡û
>W1810760523
QPKF01000001
Bacillota
Exiguobacterium sp. RIT594 [QPKF]
1892965
1892893
-
Trp
CCA
[ENA]
¡û
>W1810760974
QPKS01000003
Bacillota
Exiguobacterium flavidum HF60 [QPKS]
265755
265683
-
Trp
CCA
[ENA]
¡û
>W1810823260
QSGS01000012
Bacillota
Exiguobacterium sp. AM39-5BH [QSGS]
54586
54515
-
Trp
CCA
[ENA]
¡û
>W1511325287
JQGI01000013
Bacillota
Exiguobacterium mexicanum HUD [JQGI]
690
761
+
Trp
CCA
[ENA]
¡û
>W1511403352
JTLB01000007
Bacillota
Exiguobacterium sp. ZOR0005 [JTLB]
40511
40439
-
Trp
CCA
[ENA]
¡û
>W1511638503
LDNY01000001
Bacillota
Exiguobacterium sp. JLM-2 [LDNY]
2092324
2092252
-
Trp
CCA
[ENA]
¡û
>W1511686077
LFQN01000017
Bacillota
Exiguobacterium acetylicum ZBG2 [LFQN]
40924
40852
-
Trp
CCA
[ENA]
¡û
>W1511699988
LGIW01000015
Bacillota
Exiguobacterium sp. BMC-KP [LGIW]
638
710
+
Trp
CCA
[ENA]
¡û
>C131001822
CP003063
Bacillota
Exiguobacterium antarcticum B7 Eab7 [CP003063]
662970
663042
+
Trp
CCA
[Ensembl]
¡û
>W1610521257
JMEH01000011
Bacillota
Exiguobacterium chiriqhucha pavilionensis [JMEH]
1132
1203
+
Trp
CCA
[ENA]
¡û
>W1610589629
LDQV01000035
Bacillota
Exiguobacterium indicum [LDQV]
893
965
+
Trp
CCA
[ENA]
¡û
>W1610589660
LDQW01000008
Bacillota
Exiguobacterium indicum [LDQW]
680
752
+
Trp
CCA
[ENA]
¡û
>W1610739293
LMPR01000015
Bacillota
Exiguobacterium sp. Leaf187 [LMPR]
571
499
-
Trp
CCA
[ENA]
¡û
>W1610739451
LMPV01000001
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
76579
76651
+
Trp
CCA
[ENA]
¡û
>W1610767740
LNQL01000002
Bacillota
Exiguobacterium enclense [LNQL]
1196
1268
+
Trp
CCA
[ENA]
¡û
>W1610928351
LUCU01000022
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
774375
774303
-
Trp
CCA
[ENA]
¡û
>W1610977343
LVVL01000001
Bacillota
Exiguobacterium undae [LVVL]
1982885
1982813
-
Trp
CCA
[ENA]
¡û
>W1710511216
FMYN01000002
Bacillota
Exiguobacterium enclense [FMYN]
1196
1268
+
Trp
CCA
[ENA]
¡û
>W1710619737
JMEH01000011
Bacillota
Exiguobacterium chiriqhucha pavilionensis [JMEH]
1132
1203
+
Trp
CCA
[ENA]
¡û
>W1710708909
LDQV01000035
Bacillota
Exiguobacterium indicum [LDQV]
893
965
+
Trp
CCA
[ENA]
¡û
>W1710708940
LDQW01000008
Bacillota
Exiguobacterium indicum [LDQW]
680
752
+
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK