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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.414332 (33 seq.)
>A171007726
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
56252
56323
+
Ala
TGC
-
¡û
>A171007763
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
56252
56323
+
Ala
TGC
-
¡û
>A173000152
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
800655
800584
-
Ala
CGC
-
¡û
>A173000305
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
1665687
1665615
-
Ala
CGC
-
¡û
>W141000038
AADL01000962
Unclassified
mine drainage metagenome Group III [AADL]
757
686
-
Ala
CGC
[ENA]
¡û
>W141000058
AADL01001279
Unclassified
mine drainage metagenome Group III [AADL]
411
340
-
Ala
CGC
[ENA]
¡û
>W141000087
AADL01001520
Unclassified
mine drainage metagenome Group III [AADL]
26675
26746
+
Ala
CGC
[ENA]
¡û
>W141000122
AADL01001734
Unclassified
mine drainage metagenome Group III [AADL]
8626
8697
+
Ala
TGC
[ENA]
¡û
>W141000138
AADL01001958
Unclassified
mine drainage metagenome Group III [AADL]
3707
3778
+
Ala
CGC
[ENA]
¡û
>W141000148
AADL01002121
Unclassified
mine drainage metagenome Group III [AADL]
290
361
+
Ala
CGC
[ENA]
¡û
>W141000151
AADL01002189
Unclassified
mine drainage metagenome Group III [AADL]
641
712
+
Ala
CGC
[ENA]
¡û
>W141000153
AADL01002240
Unclassified
mine drainage metagenome Group III [AADL]
601
672
+
Ala
TGC
[ENA]
¡û
>WENV180343166
OBLK01000051
[OBLK] soil metagenome; Clay
7024
6953
-
Ala
CGC
[ENA]
¢þ
>WENV181295065
OFHI01000069
[OFHI] soil metagenome; Clay
19310
19381
+
Ala
CGC
[ENA]
¢þ
>WENV181295632
OFHJ01000025
[OFHJ] soil metagenome; Clay
24532
24461
-
Ala
CGC
[ENA]
¢þ
>WENV181296204
OFHJ01013463
[OFHJ] soil metagenome; Clay
42
113
+
Ala
CGC
[ENA]
¢þ
>At1758
AE017261
Unclassified
Picrophilus oshimae DSM 9789 DSM 9790 [AE017261]
618384
618313
-
Ala
CGC
[Ensembl]
¡û
>W1910469084
FWYE01000001
Unclassified
Picrophilus oshimae DSM 9789 [FWYE]
358520
358592
+
Ala
CGC
[ENA]
¡û
>W1910585094
JYHS01000003
Unclassified
Acidiplasma sp. MBA-1 [JYHS]
66669
66598
-
Ala
CGC
[ENA]
¡û
>ENV09002027
ACXJ01007210
Mine drainage metagenome Contig1
1349
1278
-
Ala
TGC
[ENA]
¡û
>ENV09002185
ACXJ01010989
Mine drainage metagenome Contig1
257
186
-
Ala
TGC
[ENA]
¡û
>ENV09002356
ACXM01000005
Thermoplasmatales archaeon I-plasma
763
690
-
Ala
CGC
[ENA]
¡û
>W1610047584
BBDK01000003
Unclassified
Acidiplasma cupricumulans JCM 13668 [BBDK]
36289
36218
-
Ala
CGC
[ENA]
¡û
>W1610642295
LJCQ01000144
Unclassified
Acidiplasma aeolicum V [LJCQ]
1527
1598
+
Ala
CGC
[ENA]
¡û
>W1610670473
LKBG01000242
Unclassified
Acidiplasma aeolicum VT [LKBG]
1778
1849
+
Ala
CGC
[ENA]
¡û
>W1610670503
LKBH01000181
Unclassified
Acidiplasma cupricumulans BH2 [LKBH]
26424
26353
-
Ala
CGC
[ENA]
¡û
>WENV077046
AADL01000962
Acid Mine Drainage microbial communities from Richmond mine
757
683
-
Ala
CGC
[ENA]
>WENV077066
AADL01001279
Acid Mine Drainage microbial communities from Richmond mine
411
337
-
Ala
CGC
[ENA]
>WENV077095
AADL01001520
Acid Mine Drainage microbial communities from Richmond mine
26675
26749
+
Ala
CGC
[ENA]
>WENV077130
AADL01001734
Acid Mine Drainage microbial communities from Richmond mine
8626
8700
+
Ala
TGC
[ENA]
>WENV077156
AADL01002121
Acid Mine Drainage microbial communities from Richmond mine
290
364
+
Ala
CGC
[ENA]
>WENV077159
AADL01002189
Acid Mine Drainage microbial communities from Richmond mine
641
715
+
Ala
CGC
[ENA]
>WENV077161
AADL01002240
Acid Mine Drainage microbial communities from Richmond mine
601
675
+
Ala
TGC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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