This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.414454 (57 seq.)
>W1711484248
MKCO01000001
Campylobacterota
Poseidonibacter lekithochrous LFT 1.7 [MKCO]
475488
475562
+
Gln
TTG
[ENA]
¡û
>W1711484255
MKCO01000001
Campylobacterota
Poseidonibacter lekithochrous LFT 1.7 [MKCO]
1054516
1054590
+
Gln
TTG
[ENA]
¡û
>W1711484302
MKCO01000037
Campylobacterota
Poseidonibacter lekithochrous LFT 1.7 [MKCO]
311
385
+
Gln
TTG
[ENA]
¡û
>C171088976
CP019070
Campylobacterota
Poseidonibacter parvus LPB0137 [CP019070]
2013156
2013082
-
Gln
TTG
-
¡û
>C171088984
CP019070
Campylobacterota
Poseidonibacter parvus LPB0137 [CP019070]
1464422
1464348
-
Gln
TTG
-
¡û
>C171088991
CP019070
Campylobacterota
Poseidonibacter parvus LPB0137 [CP019070]
1115885
1115811
-
Gln
TTG
-
¡û
>WENV180044149
LQAJ01008698
[LQAJ] bioreactor metagenome; bioreactor_6 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
608
682
+
Gln
TTG
[ENA]
¢þ
>WENV180381190
OBOR01162098
[OBOR] marine metagenome; ENVO 00002227
328
402
+
Gln
TTG
[ENA]
¢þ
>WENV170012976
ASRQ01000927
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
2
76
+
Gln
TTG
[ENA]
¢þ
>WENV170014505
AYRG01004677
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
75
1
-
Gln
TTG
[ENA]
¢þ
>WENV170598246
FUWD010030308
[FUWD] metagenome; unknown
42
116
+
Gln
TTG
[ENA]
¢þ
>WENV170614916
FUWD012844302
[FUWD] metagenome; unknown
474
400
-
Gln
TTG
[ENA]
¢þ
>WENV170615394
FUWD012856617
[FUWD] metagenome; unknown
760
686
-
Gln
TTG
[ENA]
¢þ
>WENV170615396
FUWD012856618
[FUWD] metagenome; unknown
385
311
-
Gln
TTG
[ENA]
¢þ
>WENV170615399
FUWD012856619
[FUWD] metagenome; unknown
244
170
-
Gln
TTG
[ENA]
¢þ
>WENV170646393
JQGR01000804
[JQGR] bioreactor metagenome; continuous culture inoculated with microbial biomass from the upper 2 cm of a marine
2328
2254
-
Gln
TTG
[ENA]
¢þ
>WENV170646419
JQGR01003097
[JQGR] bioreactor metagenome; continuous culture inoculated with microbial biomass from the upper 2 cm of a marine
723
649
-
Gln
TTG
[ENA]
¢þ
>WENV170646427
JQGR01003681
[JQGR] bioreactor metagenome; continuous culture inoculated with microbial biomass from the upper 2 cm of a marine
536
610
+
Gln
TTG
[ENA]
¢þ
>WENV170646454
JQGR01007194
[JQGR] bioreactor metagenome; continuous culture inoculated with microbial biomass from the upper 2 cm of a marine
374
300
-
Gln
TTG
[ENA]
¢þ
>WENV170704245
LLEJ01000528
[LLEJ] bioreactor metagenome; day101 10degC chemostat 2011 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
4720
4794
+
Gln
TTG
[ENA]
¢þ
>WENV170704294
LLEJ01002099
[LLEJ] bioreactor metagenome; day101 10degC chemostat 2011 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
1597
1523
-
Gln
TTG
[ENA]
¢þ
>WENV170704938
LLEN01018754
[LLEN] bioreactor metagenome; day86 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
51
125
+
Gln
TTG
[ENA]
¢þ
>WENV170924833
MDTG01072539
[MDTG] marine metagenome; seawater
2758
2832
+
Gln
TTG
[ENA]
¢þ
>WENV170929925
MDTG01158625
[MDTG] marine metagenome; seawater
16352
16278
-
Gln
TTG
[ENA]
¢þ
>WENV170932362
MDTG01201327
[MDTG] marine metagenome; seawater
16
90
+
Gln
TTG
[ENA]
¢þ
>WENV170932363
MDTG01201327
[MDTG] marine metagenome; seawater
4202
4276
+
Gln
TTG
[ENA]
¢þ
>WENV170934857
MDTG01246115
[MDTG] marine metagenome; seawater
85
11
-
Gln
TTG
[ENA]
¢þ
>WENV170941834
MDTG01367314
[MDTG] marine metagenome; seawater
11234
11160
-
Gln
TTG
[ENA]
¢þ
>C191084640
CP032101
Campylobacterota
Malaciobacter marinus JCM 15502 [CP032101]
198465
198539
+
Gln
TTG
-
¡û
>C191084671
CP032101
Campylobacterota
Malaciobacter marinus JCM 15502 [CP032101]
1363225
1363151
-
Gln
TTG
-
¡û
>C191084675
CP032101
Campylobacterota
Malaciobacter marinus JCM 15502 [CP032101]
1362779
1362705
-
Gln
TTG
-
¡û
>W1911413075
NWVW01000017
Campylobacterota
Malaciobacter canalis F138-33 [NWVW]
6253
6327
+
Gln
TTG
[ENA]
¡û
>W1911413079
NWVW01000017
Campylobacterota
Malaciobacter canalis F138-33 [NWVW]
6686
6760
+
Gln
TTG
[ENA]
¡û
>W1911413091
NWVW01000023
Campylobacterota
Malaciobacter canalis F138-33 [NWVW]
2932
2858
-
Gln
TTG
[ENA]
¡û
>W1911413113
NWVX01000017
Campylobacterota
Malaciobacter marinus F140-37 [NWVX]
47811
47885
+
Gln
TTG
[ENA]
¡û
>W1911413117
NWVX01000017
Campylobacterota
Malaciobacter marinus F140-37 [NWVX]
48258
48332
+
Gln
TTG
[ENA]
¡û
>W1911413138
NWVX01000035
Campylobacterota
Malaciobacter marinus F140-37 [NWVX]
26067
26141
+
Gln
TTG
[ENA]
¡û
>W1911419359
NXAO01000011
Campylobacterota
Malaciobacter marinus CECT 7727 [NXAO]
26085
26011
-
Gln
TTG
[ENA]
¡û
>W1911419363
NXAO01000011
Campylobacterota
Malaciobacter marinus CECT 7727 [NXAO]
25639
25565
-
Gln
TTG
[ENA]
¡û
>W1911419378
NXAO01000017
Campylobacterota
Malaciobacter marinus CECT 7727 [NXAO]
2866
2792
-
Gln
TTG
[ENA]
¡û
>W1911426365
NXIH01000002
Campylobacterota
Arcobacter defluvii CECT 7697 [NXIH]
256233
256159
-
Gln
TTG
[ENA]
¡û
>W1911426446
NXII01000027
Campylobacterota
Arcobacter cloacae CECT 7834 [NXII]
3519
3593
+
Gln
TTG
[ENA]
¡û
>W1911576346
PDJY01000031
Campylobacterota
Malaciobacter halophilus F166-45 [PDJY]
10644
10570
-
Gln
TTG
[ENA]
¡û
>W1911576350
PDJY01000031
Campylobacterota
Malaciobacter halophilus F166-45 [PDJY]
10198
10124
-
Gln
TTG
[ENA]
¡û
>W1911576375
PDJY01000037
Campylobacterota
Malaciobacter halophilus F166-45 [PDJY]
25924
25998
+
Gln
TTG
[ENA]
¡û
>W1911717864
QQTC01000039
Campylobacterota
Arcobacter sp. HD9-500m-PIT-SAG03 [QQTC]
1256
1330
+
Gln
TTG
[ENA]
¡û
>W1810295904
PTIW01000011
Campylobacterota
Malaciobacter marinus MARC-MIP3H16 [PTIW]
43016
42942
-
Gln
TTG
[ENA]
¡û
>W1810295908
PTIW01000011
Campylobacterota
Malaciobacter marinus MARC-MIP3H16 [PTIW]
42567
42493
-
Gln
TTG
[ENA]
¡û
>W1810295933
PTIW01000037
Campylobacterota
Malaciobacter marinus MARC-MIP3H16 [PTIW]
3023
2949
-
Gln
TTG
[ENA]
¡û
>W1810462549
PZYW01000001
Campylobacterota
Poseidonibacter lekithochrous LMG 28652 [PZYW]
196237
196163
-
Gln
TTG
[ENA]
¡û
>W1810462556
PZYW01000002
Campylobacterota
Poseidonibacter lekithochrous LMG 28652 [PZYW]
332465
332539
+
Gln
TTG
[ENA]
¡û
>C11101042
AP012048
Campylobacterota
Arcobacter sp. L [AP012048]
1580477
1580551
+
Gln
TTG
[Ensembl]
¡û
>W1710082852
BDIR01000001
Campylobacterota
Arcobacter sp. LA11 [BDIR]
359296
359370
+
Gln
TTG
[ENA]
¡û
>W1710082853
BDIR01000003
Campylobacterota
Arcobacter sp. LA11 [BDIR]
53324
53398
+
Gln
TTG
[ENA]
¡û
>W1710602841
FUYO01000023
Campylobacterota
Malaciobacter marinus [FUYO]
42322
42248
-
Gln
TTG
[ENA]
¡û
>W1710602845
FUYO01000023
Campylobacterota
Malaciobacter marinus [FUYO]
41889
41815
-
Gln
TTG
[ENA]
¡û
>W1710602859
FUYO01000040
Campylobacterota
Malaciobacter marinus [FUYO]
19670
19744
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK