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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.416034 (62 seq.)
>W131033991
AJFD01000063
Actinomycetota
Streptomyces viridosporus T7A [AJFD]
19059
18988
-
Gly
TCC
[ENA]
¡û
>W131161632
AQXW01000004
Actinomycetota
Demetria terragena DSM 11295 [AQXW]
830395
830322
-
Gly
TCC
[ENA]
¡û
>W1711317355
MAXF01000028
Actinomycetota
Streptomyces sparsogenes [MAXF]
87980
88053
+
Gly
TCC
[ENA]
¡û
>W1711343608
MCIM01000001
Actinomycetota
Pseudonocardia sp. Ae331_Ps2 [MCIM]
641898
641969
+
Gly
TCC
[ENA]
¡û
>W1711388691
MEIA01000202
Actinomycetota
Couchioplanes caeruleus subsp. caeruleus [MEIA]
6479
6552
+
Gly
TCC
[ENA]
¡û
>W1711491831
MKJX01000099
Actinomycetota
Pseudonocardia sp. CNS-139 [MKJX]
51166
51239
+
Gly
TCC
[ENA]
¡û
>WENV180280301
OBHY01000004
[OBHY] human gut metagenome; Tissue from the tricuspid valve
5107
5179
+
Gly
TCC
[ENA]
¢þ
>WENV180280445
OBHZ01000001
[OBHZ] human gut metagenome; Vulva exsudate
242774
242846
+
Gly
TCC
[ENA]
¢þ
>WENV180285467
OBID01444163
[OBID] metagenome; sludge
129
56
-
Gly
TCC
[ENA]
¢þ
>WENV180318086
OBKL01060466
[OBKL] soil metagenome; Alaskan Permafrost
180
107
-
Gly
TCC
[ENA]
¢þ
>WENV180690229
OCZS010000940
[OCZS] soil metagenome; soil
1673
1746
+
Gly
TCC
[ENA]
¢þ
>WENV181188152
OEOE01034052
[OEOE] activated sludge metagenome; Activated Sludge
378
305
-
Gly
TCC
[ENA]
¢þ
>WENV181189613
OEOF01113712
[OEOF] activated sludge metagenome; Activated Sludge
195
124
-
Gly
TCC
[ENA]
¢þ
>WENV181292202
OFHD01054829
[OFHD] soil metagenome; Clay
264
191
-
Gly
TCC
[ENA]
¢þ
>W141142502
AWQS01000217
Actinomycetota
Intrasporangium chromatireducens Q5-1 [AWQS]
1870
1799
-
Gly
TCC
[ENA]
¡û
>W141242272
CAIE01000039
Actinomycetota
Micromonospora lupini str. Lupac 08 [CAIE]
523291
523364
+
Gly
TCC
[ENA]
¡û
>W141274438
JABQ01000001
Actinomycetota
Streptomyces sp. PRh5 [JABQ]
125204
125131
-
Gly
TCC
[ENA]
¡û
>W141278040
JAFB01000002
Actinomycetota
Amycolatopsis taiwanensis DSM 45107 [JAFB]
151399
151472
+
Gly
TCC
[ENA]
¡û
>WENV183092672
OLLI01001095
[OLLI] soil metagenome; soil
15862
15935
+
Gly
TCC
[ENA]
¢þ
>WENV183704612
PDWI01000402
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1590
1518
-
Gly
TCC
[ENA]
¢þ
>WENV183719854
PDWJ01021823
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
220
293
+
Gly
TCC
[ENA]
¢þ
>WENV183720302
PDWJ01031129
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1614
1541
-
Gly
TCC
[ENA]
¢þ
>WENV183721351
PDWJ01065403
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
220
292
+
Gly
TCC
[ENA]
¢þ
>WENV170009985
APMI01006418
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
3960
3889
-
Gly
TCC
[ENA]
¢þ
>WENV170010555
APMI01020440
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1640
1713
+
Gly
TCC
[ENA]
¢þ
>WENV170011004
APMI01038993
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1681
1754
+
Gly
TCC
[ENA]
¢þ
>WENV170012030
APMI01112709
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1198
1125
-
Gly
TCC
[ENA]
¢þ
>WENV170012397
APMI01168224
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
960
889
-
Gly
TCC
[ENA]
¢þ
>WENV170974576
MTKY01066135
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
2616
2689
+
Gly
TCC
[ENA]
¢þ
>WENV170979632
MTKZ01099824
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
701
630
-
Gly
TCC
[ENA]
¢þ
>C181200620
CP031455
Actinomycetota
Streptomyces olivoreticuli subsp. olivoreticuli ATCC 31159 [CP031455]
3873636
3873709
+
Gly
TCC
-
¡û
>C191007420
AP019371
Actinomycetota
Actinoplanes sp. OR16 [AP019371]
3453338
3453267
-
Gly
TCC
-
¡û
>C191026505
CP023865
Actinomycetota
Actinoplanes teichomyceticus ATCC 31121 [CP023865]
1317536
1317465
-
Gly
TCC
-
¡û
>W141774867
JOJI01000010
Actinomycetota
Streptomyces sp. NRRL WC-3773 [JOJI]
74205
74132
-
Gly
TCC
[ENA]
¡û
>W1910182945
BJNH01000061
Actinomycetota
Pseudonocardia saturnea NBRC 14499 [BJNH]
48362
48433
+
Gly
TCC
[ENA]
¡û
>W1910618685
LJIW01000001
Actinomycetota
Streptomyces malaysiensis F913 [LJIW]
4241534
4241607
+
Gly
TCC
[ENA]
¡û
>W1910647351
LXWC01000013
Actinomycetota
Streptomyces sp. ST1015 [LXWC]
22783
22854
+
Gly
TCC
[ENA]
¡û
>W1910916457
NHZO01000151
Actinomycetota
Streptomyces cinnamoneus ATCC 21532 [NHZO]
356809
356736
-
Gly
TCC
[ENA]
¡û
>W1911083436
NNBK01000002
Actinomycetota
Streptomyces sp. CB01373 [NNBK]
79654
79583
-
Gly
TCC
[ENA]
¡û
>W1911492526
OBDY01000003
Actinomycetota
Actinoplanes atraurantiacus CGMCC 4.6857 [OBDY]
536116
536045
-
Gly
TCC
[ENA]
¡û
>W1810121533
PHUK01000001
Actinomycetota
Kitasatospora sp. OK780 [PHUK]
5282736
5282665
-
Gly
TCC
[ENA]
¡û
>W1810392165
PYAB01000024
Actinomycetota
Micromonospora noduli Lupac 07 [PYAB]
147033
146960
-
Gly
TCC
[ENA]
¡û
>W1810392246
PYAD01000048
Actinomycetota
Micromonospora noduli ONO23 [PYAD]
146786
146713
-
Gly
TCC
[ENA]
¡û
>W1810392373
PYAG01000010
Actinomycetota
Micromonospora saelicesensis PSN13 [PYAG]
197902
197829
-
Gly
TCC
[ENA]
¡û
>W1810392505
PYAI01000199
Actinomycetota
Micromonospora saelicesensis PSN01 [PYAI]
6729
6802
+
Gly
TCC
[ENA]
¡û
>W1810392592
PYAK01000003
Actinomycetota
Micromonospora noduli GUI43 [PYAK]
6768
6841
+
Gly
TCC
[ENA]
¡û
>W1810861667
QTUA01000001
Actinomycetota
Calidifontibacter indicus DSM 22967 [QTUA]
2886181
2886108
-
Gly
TCC
[ENA]
¡û
>C151051002
CP009438
Actinomycetota
Streptomyces glaucescens GLA.O [CP009438]
2743033
2743104
+
Gly
TCC
[Ensembl]
¡û
>C151087182
CP011868
Actinomycetota
Pseudonocardia sp. HH130629-09 [CP011868]
677306
677379
+
Gly
TCC
-
¡û
>C11111419
CP002343
Actinomycetota
Intrasporangium calvum DSM 43043 [CP002343]
1528634
1528707
+
Gly
TCC
[Ensembl]
¡û
>C121007293
CP003170
Actinomycetota
Actinoplanes sp. SE50/110 [CP003170]
1400520
1400447
-
Gly
TCC
[Ensembl]
¡û
>W121023905
AHBF01000056
Actinomycetota
Streptomyces acidiscabies 84-104 [AHBF]
36563
36492
-
Gly
TCC
[ENA]
¡û
>W1610027088
AVPI01000036
Actinomycetota
Knoellia flava TL1 [AVPI]
3259
3332
+
Gly
TCC
[ENA]
¡û
>W1610027220
AVPL01000045
Actinomycetota
Knoellia aerolata DSM 18566 [AVPL]
12429
12356
-
Gly
TCC
[ENA]
¡û
>W1610072289
BCUV01000003
Actinomycetota
Janibacter terrae NBRC 107853 [BCUV]
55770
55697
-
Gly
TCC
[ENA]
¡û
>C131015993
CP005929
Actinomycetota
Actinoplanes sp. N902-109 [CP005929]
1623757
1623686
-
Gly
TCC
[Ensembl]
¡û
>W1710023253
AVPI01000036
Actinomycetota
Knoellia flava TL1 [AVPI]
3259
3332
+
Gly
TCC
[ENA]
¡û
>W1710023385
AVPL01000045
Actinomycetota
Knoellia aerolata DSM 18566 [AVPL]
12429
12356
-
Gly
TCC
[ENA]
¡û
>W1710069491
BCUV01000003
Actinomycetota
Janibacter terrae NBRC 107853 [BCUV]
55770
55697
-
Gly
TCC
[ENA]
¡û
>W1710561041
FONV01000015
Actinomycetota
Actinoplanes philippinensis [FONV]
217820
217747
-
Gly
TCC
[ENA]
¡û
>W1710596062
FTMI01000009
Actinomycetota
Cellulosimicrobium aquatile [FTMI]
102128
102055
-
Gly
TCC
[ENA]
¡û
>W1710650825
JUJA01000045
Actinomycetota
Streptomyces kebangsaanensis [JUJA]
153648
153719
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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