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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.416051 (78 seq.)
>W1710802241
LJXT01000082
Bacteroidota
Algoriphagus marincola HL-49 [LJXT]
4893
4966
+
Trp
CCA
[ENA]
¡û
>W131146341
AQHR01000107
Bacteroidota
Lunatimonas lonarensis AK24 [AQHR]
148181
148108
-
Trp
CCA
[ENA]
¡û
>W131179053
ARMB01000059
Bacteroidota
Rhodonellum psychrophilum DSM 17998 [ARMB]
399492
399563
+
Trp
CCA
[ENA]
¡û
>W131223087
AUBU01000002
Bacteroidota
Algoriphagus marincola DSM 16067 [AUBU]
59226
59299
+
Trp
CCA
[ENA]
¡û
>W131223128
AUBV01000003
Bacteroidota
Algoriphagus mannitolivorans DSM 15301 [AUBV]
328611
328682
+
Trp
CCA
[ENA]
¡û
>W131223165
AUBW01000004
Bacteroidota
Algoriphagus terrigena DSM 22685 [AUBW]
91407
91336
-
Trp
CCA
[ENA]
¡û
>W131223228
AUBX01000016
Bacteroidota
Algoriphagus vanfongensis DSM 17529 [AUBX]
307003
307076
+
Trp
CCA
[ENA]
¡û
>W1711385147
MEDT01000165
Bacteroidota
Cytophagaceae bacterium SCN 52-12 [MEDT]
695
622
-
Trp
CCA
[ENA]
¡û
>W1711501383
MKRO01000016
Bacteroidota
Sphingobacteriales bacterium 41-5 [MKRO]
5781
5708
-
Trp
CCA
[ENA]
¡û
>W1711503738
MKTW01000010
Bacteroidota
Sphingobacteriales bacterium 44-61 [MKTW]
129182
129255
+
Trp
CCA
[ENA]
¡û
>W1711707954
MSSX01000004
Bacteroidota
Algoriphagus faecimaris [MSSX]
67028
66955
-
Trp
CCA
[ENA]
¡û
>W1711751664
MUNY01000033
Bacteroidota
Algoriphagus sp. A40 [MUNY]
7768
7839
+
Trp
CCA
[ENA]
¡û
>WENV180264641
OBEQ011589185
[OBEQ] groundwater metagenome; groundwater
101
172
+
Trp
CCA
[ENA]
¢þ
>W141039117
ALWO02000011
Bacteroidota
Indibacter alkaliphilus LW1 [ALWO]
191456
191383
-
Trp
CCA
[ENA]
¡û
>W141043707
AMGM01000003
Bacteroidota
Cecembia lonarensis LW9 [AMGM]
72637
72564
-
Trp
CCA
[ENA]
¡û
>WENV181171068
OEIV010139624
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
161
232
+
Trp
CCA
[ENA]
¢þ
>WENV181233826
OFET01000126
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
62085
62156
+
Trp
CCA
[ENA]
¢þ
>WENV181234765
OFEU01004807
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
703
774
+
Trp
CCA
[ENA]
¢þ
>WENV181402407
OFTY01001143
[OFTY] sludge metagenome; sludge
6024
5953
-
Trp
CCA
[ENA]
¢þ
>W141148144
AWXR01000001
Bacteroidota
Rhodonellum psychrophilum GCM71 = DSM 17998 [AWXR]
126964
127035
+
Trp
CCA
[ENA]
¡û
>WENV181844066
OGVV01006958
[OGVV] freshwater metagenome; freshwater
860
931
+
Trp
CCA
[ENA]
¢þ
>W141278916
JAFX01000001
Bacteroidota
Algoriphagus marincola HL-49 [JAFX]
3821222
3821295
+
Trp
CCA
[ENA]
¡û
>WENV170010863
APMI01032072
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2683
2755
+
Trp
CCA
[ENA]
¢þ
>WENV170010864
APMI01032074
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
230
159
-
Trp
CCA
[ENA]
¢þ
>WENV170192609
CEPF01034445
[CEPF] marine metagenome genome assembly TARA_039_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1020
947
-
Trp
CCA
[ENA]
¢þ
>WENV170192996
CEPG01046722
[CEPG] marine metagenome genome assembly TARA_046_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
491
418
-
Trp
CCA
[ENA]
¢þ
>WENV170408931
CEUI01102601
[CEUI] marine metagenome genome assembly TARA_125_MIX_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
275
202
-
Trp
CCA
[ENA]
¢þ
>WENV170574478
FLYM01043747
[FLYM] hot springs metagenome; Sediment
265
192
-
Trp
CCA
[ENA]
¢þ
>WENV170574527
FLYM01053979
[FLYM] hot springs metagenome; Sediment
1799
1870
+
Trp
CCA
[ENA]
¢þ
>WENV170652009
JRYG01039689
[JRYG] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
863
792
-
Trp
CCA
[ENA]
¢þ
>WENV170670535
LAHT01035750
[LAHT] activated sludge metagenome; Sample C-4; Sludge from methanogenic chamber (fourth chamber) of Anaerobic Baffled Reactor over
175
248
+
Trp
CCA
[ENA]
¢þ
>WENV170837048
MDSZ01142198
[MDSZ] marine metagenome; seawater
1529
1456
-
Trp
CCA
[ENA]
¢þ
>WENV170980749
MWVT01000204
[MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil
7134
7207
+
Trp
CCA
[ENA]
¢þ
>WENV170981419
MWVT01089673
[MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil
327
398
+
Trp
CCA
[ENA]
¢þ
>WENV170984839
MWVW01000604
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
7536
7463
-
Trp
CCA
[ENA]
¢þ
>WENV170984960
MWVW01005446
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
1771
1698
-
Trp
CCA
[ENA]
¢þ
>WENV170985625
MWVX01000050
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
34259
34332
+
Trp
CCA
[ENA]
¢þ
>WENV170985626
MWVX01000050
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
35338
35265
-
Trp
CCA
[ENA]
¢þ
>WENV170986263
MWVX01025635
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
1500
1573
+
Trp
CCA
[ENA]
¢þ
>WENV170987557
MWVX01216630
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
288
215
-
Trp
CCA
[ENA]
¢þ
>WENV170988743
MWVY01001697
[MWVY] soil metagenome; MS7-5 sample; Antarctic (ecotone) soil
174
245
+
Trp
CCA
[ENA]
¢þ
>WENV170992308
MWWB01014230
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
768
841
+
Trp
CCA
[ENA]
¢þ
>WENV170993215
MWWB01218351
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
54
127
+
Trp
CCA
[ENA]
¢þ
>WENV170998174
MWWI01029385
[MWWI] soil metagenome; FI-1 sample; Antarctic (ecotone) soil
77
6
-
Trp
CCA
[ENA]
¢þ
>C181187369
CP030041
Bacteroidota
Echinicola strongylocentroti MEBiC08714 [CP030041]
2052028
2051957
-
Trp
CCA
-
¡û
>C191175216
CP040106
Bacteroidota
Echinicola rosea JL3085 [CP040106]
272140
272069
-
Trp
CCA
-
¡û
>C191189191
CP041253
Bacteroidota
Echinicola soli LN3S3 [CP041253]
273099
273028
-
Trp
CCA
-
¡û
>W141699657
JMIH01000014
Bacteroidota
Anditalea andensis [JMIH]
618420
618347
-
Trp
CCA
[ENA]
¡û
>W1910548306
FZOK01000008
Bacteroidota
Belliella buryatensis 5C [FZOK]
109224
109153
-
Trp
CCA
[ENA]
¡û
>W1910932894
NIUC01000002
Bacteroidota
Algoriphagus formosus XAY3209 [NIUC]
592629
592558
-
Trp
CCA
[ENA]
¡û
>W1911775203
QXML01000001
Bacteroidota
Algoriphagus lacus N3 [QXML]
870200
870271
+
Trp
CCA
[ENA]
¡û
>W1810365009
PVTR01000008
Bacteroidota
Mongoliibacter ruber DSM 27929 [PVTR]
167490
167419
-
Trp
CCA
[ENA]
¡û
>W1810400583
PYGF01000003
Bacteroidota
Cecembia rubra DSM 28057 [PYGF]
115397
115326
-
Trp
CCA
[ENA]
¡û
>W1810606274
QGOL01000008
Bacteroidota
Algoriphagus litoralis DSL-12 [QGOL]
98139
98068
-
Trp
CCA
[ENA]
¡û
>W1810682169
QKTX01000006
Bacteroidota
Algoriphagus aquaeductus T4 [QKTX]
122167
122238
+
Trp
CCA
[ENA]
¡û
>W1810705055
QMIK01000003
Bacteroidota
Cognataquiflexum aquatile Z0201 [QMIK]
473067
473138
+
Trp
CCA
[ENA]
¡û
>ENV09003740
ADGO01163439
Compost metagenome contig00001
256
183
-
Trp
CCA
[ENA]
¡û
>C121010185
CP003281
Bacteroidota
Belliella baltica DSM 15883 [CP003281]
1804281
1804354
+
Trp
CCA
[Ensembl]
¡û
>C161046170
CP012836
Bacteroidota
Algoriphagus sanaruensis M8-2 [CP012836]
1232714
1232785
+
Trp
CCA
[Ensembl]
¡û
>W121064850
AJMQ01000109
Bacteroidota
Marinilabilia nitratireducens AK2 [AJMQ]
64399
64326
-
Trp
CCA
[ENA]
¡û
>W121071518
AJYA01000002
Bacteroidota
Nitritalea halalkaliphila LW7 [AJYA]
42556
42629
+
Trp
CCA
[ENA]
¡û
>WENV006453
AACY020173978
Marine microbial communities from Global Ocean Sampling (GOS)
613
538
-
Trp
CCA
[ENA]
>WENV006615
AACY020176854
Marine microbial communities from Global Ocean Sampling (GOS)
1242
1317
+
Trp
CCA
[ENA]
>W1610050118
BBFN01000020
Bacteroidota
Algoriphagus boritolerans DSM 17298 = JCM 18970 [BBFN]
29270
29341
+
Trp
CCA
[ENA]
¡û
>C131003322
CP003346
Bacteroidota
Echinicola vietnamensis DSM 17526 [CP003346]
274566
274493
-
Trp
CCA
[Ensembl]
¡û
>W1610666098
LJXT01000082
Bacteroidota
Algoriphagus marincola HL-49 [LJXT]
4893
4966
+
Trp
CCA
[ENA]
¡û
>WENV076505
AACY024100182
Marine microbial communities from Global Ocean Sampling (GOS)
938
865
-
Trp
CCA
[ENA]
>W1710046517
BBFN01000020
Bacteroidota
Algoriphagus boritolerans DSM 17298 = JCM 18970 [BBFN]
29270
29341
+
Trp
CCA
[ENA]
¡û
>W1710509410
FMXE01000021
Bacteroidota
Algoriphagus alkaliphilus [FMXE]
49475
49546
+
Trp
CCA
[ENA]
¡û
>W1710513382
FNAC01000005
Bacteroidota
Algoriphagus faecimaris [FNAC]
82649
82722
+
Trp
CCA
[ENA]
¡û
>W1710532186
FNQC01000002
Bacteroidota
Rhodonellum ikkaensis [FNQC]
489318
489389
+
Trp
CCA
[ENA]
¡û
>W1710539768
FNVR01000002
Bacteroidota
Algoriphagus boritolerans DSM 17298 = JCM 18970 [FNVR]
236635
236706
+
Trp
CCA
[ENA]
¡û
>W1710562663
FOPC01000007
Bacteroidota
Algoriphagus hitonicola [FOPC]
118960
119033
+
Trp
CCA
[ENA]
¡û
>W1710571389
FOVW01000004
Bacteroidota
Algoriphagus ornithinivorans [FOVW]
311102
311175
+
Trp
CCA
[ENA]
¡û
>W1710583469
FQUU01000016
Bacteroidota
Flavisolibacter ginsengisoli DSM 18119 [FQUU]
54493
54566
+
Trp
CCA
[ENA]
¡û
>W1710593743
FRXN01000004
Bacteroidota
Algoriphagus zhangzhouensis [FRXN]
345093
345166
+
Trp
CCA
[ENA]
¡û
>W1710594239
FSRC01000004
Bacteroidota
Algoriphagus halophilus [FSRC]
323195
323268
+
Trp
CCA
[ENA]
¡û
>W1710599288
FTOP01000008
Bacteroidota
Belliella pelovolcani [FTOP]
98581
98508
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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