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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.416617 (56 seq.)
>W131038867
AMGI01000021
Mycoplasmatota
Spiroplasma melliferum IPMB4A [AMGI]
21309
21382
+
Gly
TCC
[ENA]
¡û
>W131214897
ATUN01000013
Mycoplasmatota
Mesomycoplasma moatsii ATCC 27625 [ATUN]
45917
45844
-
Gly
TCC
[ENA]
¡û
>W1711799323
MWWN01000001
Mycoplasmatota
Mesomycoplasma hyopneumoniae [MWWN]
112373
112446
+
Gly
TCC
[ENA]
¡û
>W1711942858
NBBN01000153
Mycoplasmatota
Mesomycoplasma hyopneumoniae [NBBN]
1323
1250
-
Gly
TCC
[ENA]
¡û
>C171051513
CP016817
Mycoplasmatota
Mesomycoplasma hyorhinis MDBK-IPV [CP016817]
747834
747761
-
Gly
TCC
-
¡û
>C013562
AE017332
Mycoplasmatota
Mesomycoplasma hyopneumoniae 232 [AE017332]
784842
784915
+
Gly
TCC
[Ensembl]
¡û
>C013584
AE017244
Mycoplasmatota
Mesomycoplasma hyopneumoniae 7448 [AE017244]
808540
808613
+
Gly
TCC
[Ensembl]
¡û
>C013614
AE017243
Mycoplasmatota
Mesomycoplasma hyopneumoniae J [AE017243]
792299
792372
+
Gly
TCC
[Ensembl]
¡û
>C014010
AL445566
Mycoplasmatota
Mycoplasmopsis pulmonis [AL445566]
343928
343855
-
Gly
TCC
[Ensembl]
¡û
>W141004171
AFCG01000006
Mycoplasmatota
Mesomycoplasma flocculare ATCC 27716 [AFCG]
45596
45669
+
Gly
TCC
[ENA]
¡û
>W141283033
JAKV01000001
Mycoplasmatota
Mesomycoplasma ovipneumoniae NM2010 [JAKV]
290807
290880
+
Gly
TCC
[ENA]
¡û
>WENV170692587
LGOV01015432
[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge
1075
1148
+
Gly
TCC
[ENA]
¢þ
>W141450898
JFAD01000026
Mycoplasmatota
Mesomycoplasma ovipneumoniae 14811 [JFAD]
19001
19074
+
Gly
TCC
[ENA]
¡û
>PL191001720
LR214949
Tenericutes
Mycoplasma hyorhinis NCTC10121 plasmid:3 (LR214949)
754058
753985
-
Gly
TCC
[ENA]
¡û
>C181067061
CP022505
Mycoplasmatota
Mesoplasma florum W23 [CP022505]
315208
315281
+
Gly
TCC
-
¡û
>C181071520
CP022714
Mycoplasmatota
Mesomycoplasma hyopneumoniae KM014 [CP022714]
82264
82337
+
Gly
TCC
-
¡û
>C181096431
CP024161
Mycoplasmatota
Mesomycoplasma dispar GS01 [CP024161]
141430
141503
+
Gly
TCC
-
¡û
>C181099495
CP024411
Mycoplasmatota
Mesoplasma entomophilum TAC [CP024411]
331903
331976
+
Gly
TCC
-
¡û
>C181109450
CP024962
Mycoplasmatota
Entomoplasma freundtii BARC 318 [CP024962]
539791
539718
-
Gly
TCC
-
¡û
>C181109522
CP024965
Mycoplasmatota
Williamsoniiplasma somnilux PYAN-1 [CP024965]
384839
384912
+
Gly
TCC
-
¡û
>C191161518
CP038641
Mycoplasmatota
Mesomycoplasma hyopneumoniae ES-2 [CP038641]
849499
849572
+
Gly
TCC
-
¡û
>C191218210
LR214971
Mycoplasmatota
Mesomycoplasma dispar NCTC10125 [LR214971]
137690
137763
+
Gly
TCC
-
¡û
>C191218273
LR214992
Mycoplasmatota
Mesomycoplasma hyopneumoniae NCTC10127 [LR214992]
544372
544445
+
Gly
TCC
-
¡û
>C191218286
LR214997
Mycoplasmatota
Mesomycoplasma conjunctivae NCTC10147 [LR214997]
180648
180721
+
Gly
TCC
-
¡û
>C191218340
LR215008
Mycoplasmatota
Mycoplasmopsis pulmonis NCTC10139 [LR215008]
327469
327396
-
Gly
TCC
-
¡û
>C191218465
LR215028
Mycoplasmatota
Mesomycoplasma ovipneumoniae NCTC10151 [LR215025, LR215028]
35427
35500
+
Gly
TCC
-
¡û
>C191224150
LS483503
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483503]
372201
372274
+
Gly
TCC
-
¡û
>C191224180
LS483504
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483504]
378664
378737
+
Gly
TCC
-
¡û
>C191224269
LS483507
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483507]
376577
376650
+
Gly
TCC
-
¡û
>C191224786
LS991950
Mycoplasmatota
Mesomycoplasma hyorhinis NCTC10130 [LS991950]
749080
749007
-
Gly
TCC
-
¡û
>W1910000233
AGRE01000003
Mycoplasmatota
Mesomycoplasma ovipneumoniae ATCC 29419 [AGRE]
5162
5089
-
Gly
TCC
[ENA]
¡û
>W1910000264
AJQV01000003
Mycoplasmatota
Mycoplasma mycoides subsp. capri str. G1201 [AJQV]
5162
5089
-
Gly
TCC
[ENA]
¡û
>C141009325
CP006849
Mycoplasmatota
Mesomycoplasma hyorhinis DBS 1050 [CP006849]
747915
747842
-
Gly
TCC
[Ensembl]
¡û
>C09107467
FM864216
Mycoplasmatota
Mesomycoplasma conjunctivae HRC/581T [FM864216]
180739
180812
+
Gly
TCC
[Ensembl]
¡û
>W1910573317
JOTL01000006
Mycoplasmatota
Mesomycoplasma ovipneumoniae ATCC 29419 Y98 [JOTL]
5165
5092
-
Gly
TCC
[ENA]
¡û
>W1911630618
PSZO01000022
Mycoplasmatota
Mycoplasma marinum PE [PSZO]
1435
1508
+
Gly
TCC
[ENA]
¡û
>C151017604
CP007154
Mycoplasmatota
Mesomycoplasma bovoculi M165/69 [CP007154]
741319
741246
-
Gly
TCC
[Ensembl]
¡û
>C151019141
CP007229
Mycoplasmatota
Mesomycoplasma dispar ATCC 27140 [CP007229]
137689
137762
+
Gly
TCC
[Ensembl]
¡û
>C151029052
CP007585
Mycoplasmatota
Mesomycoplasma flocculare ATCC 27399 Ms42 [CP007585]
665499
665572
+
Gly
TCC
[Ensembl]
¡û
>C151064908
CP010267
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides izsam_mm5713 [CP010267]
407532
407605
+
Gly
TCC
[Ensembl]
¡û
>C10109442
CP002170
Mycoplasmatota
Mesomycoplasma hyorhinis HUB-1 [CP002170]
762585
762658
+
Gly
TCC
[Ensembl]
¡û
>C11114477
CP002274
Mycoplasmatota
Mesomycoplasma hyopneumoniae 168 [CP002274]
796402
796475
+
Gly
TCC
[Ensembl]
¡û
>C11114496
CP002669
Mycoplasmatota
Mesomycoplasma hyorhinis MCLD [CP002669]
564825
564898
+
Gly
TCC
[Ensembl]
¡û
>W11163120
AFHO01000007
Mycoplasmatota
Mesomycoplasma ovipneumoniae SC01 [AFHO]
41557
41630
+
Gly
TCC
[ENA]
¡û
>C121009152
CP003231
Mycoplasmatota
Mesomycoplasma hyorhinis GDL-1 [CP003231]
747932
747859
-
Gly
TCC
[Ensembl]
¡û
>W121008374
AGBZ01000004
Mycoplasmatota
Spiroplasma melliferum KC3 [AGBZ]
274771
274844
+
Gly
TCC
[ENA]
¡û
>C131002150
CP003131
Mycoplasmatota
Mesomycoplasma hyopneumoniae 168-L [CP003131]
795771
795844
+
Gly
TCC
[Ensembl]
¡û
>C131007159
CP003802
Mycoplasmatota
Mesomycoplasma hyopneumoniae 7422 [CP003802]
791223
791296
+
Gly
TCC
[Ensembl]
¡û
>C131009709
CP003914
Mycoplasmatota
Mesomycoplasma hyorhinis SK76 [CP003914]
748847
748774
-
Gly
TCC
[Ensembl]
¡û
>C131013540
CP004357
Mycoplasmatota
Mycoplasma putrefaciens Mput9231 [CP004357]
392158
392085
-
Gly
TCC
[Ensembl]
¡û
>W1710625003
JOTF01000001
Mycoplasmatota
Mesomycoplasma ovipneumoniae [JOTF]
58222
58295
+
Gly
TCC
[ENA]
¡û
>W1710625034
JOTG01000002
Mycoplasmatota
Mesomycoplasma ovipneumoniae [JOTG]
4231
4158
-
Gly
TCC
[ENA]
¡û
>W1710625063
JOTH01000003
Mycoplasmatota
Mesomycoplasma ovipneumoniae [JOTH]
14304
14231
-
Gly
TCC
[ENA]
¡û
>W1710625100
JOTI01000017
Mycoplasmatota
Mesomycoplasma ovipneumoniae [JOTI]
3511
3438
-
Gly
TCC
[ENA]
¡û
>W1710625136
JOTJ01000025
Mycoplasmatota
Mesomycoplasma ovipneumoniae [JOTJ]
3555
3482
-
Gly
TCC
[ENA]
¡û
>W1710625176
JOTK01000070
Mycoplasmatota
Mesomycoplasma ovipneumoniae [JOTK]
8658
8731
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK