This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.416631 (27 seq.)
>C171057447
CP017116
Bacillota
Erysipelothrix rhusiopathiae WH13013 [CP017116]
1193191
1193264
+
Trp
CCA
-
¡û
>W141167958
AXUN02000221
Bacillota
Youngiibacter fragilis 232.1 [AXUN]
12642
12715
+
Trp
CCA
[ENA]
¡û
>WENV170687222
LFRM01183733
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
34908
34981
+
Trp
CCA
[ENA]
¢þ
>WENV170721349
LSQX01186940
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
38060
38133
+
Trp
CCA
[ENA]
¢þ
>W09127981
ACLK01000008
Bacillota
Erysipelothrix rhusiopathiae ATCC 19414 [ACLK]
61002
61075
+
Trp
CCA
[ENA]
¡û
>C181185431
CP029804
Bacillota
Erysipelothrix rhusiopathiae ML101 [CP029804]
663627
663554
-
Trp
CCA
-
¡û
>C191108234
CP033601
Bacillota
Erysipelothrix rhusiopathiae KC-Sb-R1 [CP033601]
1187040
1187113
+
Trp
CCA
-
¡û
>C191122088
CP034234
Bacillota
Erysipelothrix piscisicarius 15TAL0474 [CP034234]
1380439
1380512
+
Trp
CCA
-
¡û
>C191211055
LR134439
Bacillota
Erysipelothrix rhusiopathiae NCTC8163 [LR134439]
1307805
1307732
-
Trp
CCA
-
¡û
>W1910637518
LQGW01000026
Bacillota
Clostridiaceae bacterium JG1575 [LQGW]
3956
3883
-
Trp
CCA
[ENA]
¡û
>W1910940439
NJAQ01000003
Bacillota
Terribacillus goriensis DSM 18252 [NJAQ]
817826
817899
+
Trp
CCA
[ENA]
¡û
>W1910940452
NJAQ01000003
Bacillota
Terribacillus goriensis DSM 18252 [NJAQ]
825176
825249
+
Trp
CCA
[ENA]
¡û
>W1911143730
NPBD01000030
Bacillota
Terribacillus saccharophilus Feb-03 [NPBD]
3
76
+
Trp
CCA
[ENA]
¡û
>W1911143774
NPBE01000390
Bacillota
Terribacillus saccharophilus Jan-04 [NPBE]
773
846
+
Trp
CCA
[ENA]
¡û
>W1911143830
NPBF01000381
Bacillota
Virgibacillus sp. 7505 [NPBF]
223
150
-
Trp
CCA
[ENA]
¡û
>W1911143914
NPBH01000072
Bacillota
Terribacillus saccharophilus 7509 [NPBH]
492
419
-
Trp
CCA
[ENA]
¡û
>W1911144023
NPBJ01000053
Bacillota
Terribacillus saccharophilus Jan-17 [NPBJ]
492
419
-
Trp
CCA
[ENA]
¡û
>W1911144080
NPBK01000032
Bacillota
Terribacillus saccharophilus 7517-W [NPBK]
391
318
-
Trp
CCA
[ENA]
¡û
>W1911144113
NPBL01000051
Bacillota
Terribacillus saccharophilus 7518 [NPBL]
492
419
-
Trp
CCA
[ENA]
¡û
>W1911144165
NPBM01000085
Bacillota
Terribacillus saccharophilus Jan-20 [NPBM]
491
418
-
Trp
CCA
[ENA]
¡û
>W1911144329
NPBP01000064
Bacillota
Terribacillus saccharophilus 7521 [NPBP]
438
511
+
Trp
CCA
[ENA]
¡û
>W1911144621
NPBV01000039
Bacillota
Terribacillus saccharophilus 7528 [NPBV]
391
318
-
Trp
CCA
[ENA]
¡û
>C151007200
CP005079
Bacillota
Erysipelothrix rhusiopathiae SY1027 [CP005079]
172374
172301
-
Trp
CCA
[Ensembl]
¡û
>C151038934
CP008876
Bacillota
Terribacillus goriensis MP602 [CP008876]
731489
731562
+
Trp
CCA
[Ensembl]
¡û
>C11108893
AP012027
Bacillota
Erysipelothrix rhusiopathiae str. Fujisawa [AP012027]
662404
662331
-
Trp
CCA
[Ensembl]
¡û
>C161053131
CP013213
Bacillota
Erysipelothrix larvae LV19 [CP013213]
981855
981782
-
Trp
CCA
[Ensembl]
¡û
>C161078638
CP014861
Bacillota
Erysipelothrix rhusiopathiae GXBY-1 [CP014861]
1302108
1302181
+
Trp
CCA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK