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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.416652 (12 seq.)
>C001825
AE016826
Gammaproteobacteria
Buchnera aphidicola str. Bp [Baizongia pistaciae] [AE016826]
429151
429081
-
Gln
TTG
[Ensembl]
¡û
>WENV181405242
OGCC01000523
[OGCC] insect metagenome; haemolymph
1336
1263
-
Gln
TTG
[ENA]
¢þ
>WENV181405303
OGCD01000250
[OGCD] insect metagenome; haemolymph
1133
1060
-
Gln
TTG
[ENA]
¢þ
>WENV170263519
CERC01054422
[CERC] marine metagenome genome assembly TARA_070_MES_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
809328
809401
+
Gln
TTG
[ENA]
¢þ
>C181164833
CP028374
Gammaproteobacteria
Candidatus Purcelliella pentastirinorum OLIH [CP028374]
31934
32006
+
Gln
TTG
-
¡û
>C191098051
CP032996
Gammaproteobacteria
Buchnera aphidicola [Therioaphis trifolii] Tma [CP032996]
300538
300466
-
Gln
TTG
-
¡û
>W09106371
AAVF01000003
Gammaproteobacteria
Enterobacter sp. 638 [AAVF]
463213
463140
-
Gln
TTG
[ENA]
¡û
>W1911021566
NLPC01000010
Gammaproteobacteria
Escherichia coli MOD1-EC5454 [NLPC]
93619
93546
-
Gln
TTG
[ENA]
¡û
>W1911214529
NRNY01000018
Gammaproteobacteria
Cronobacter dublinensis cro1046A1 [NRNY]
21625
21552
-
Gln
TTG
[ENA]
¡û
>W1911214816
NROC01000016
Gammaproteobacteria
Cronobacter dublinensis cro981C1 [NROC]
21705
21632
-
Gln
TTG
[ENA]
¡û
>C151001727
AP014521
Gammaproteobacteria
Candidatus Tachikawaea gelatinosa UwTKB [AP014521]
302839
302909
+
Gln
TTG
[Ensembl]
¡û
>C161033869
CP011299
Gammaproteobacteria
Buchnera aphidicola [Schlechtendalia chinensis] SC [CP011299]
424289
424217
-
Gln
TTG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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