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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.417016 (23 seq.)
>W131180765
ARNJ01000061
Bacteroidota
Hymenobacter aerophilus DSM 13606 [ARNJ]
113724
113795
+
Cys
GCA
[ENA]
¡û
>W131215962
ATVL01000006
Bacteroidota
Hymenobacter norwichensis DSM 15439 [ATVL]
1025175
1025248
+
Cys
GCA
[ENA]
¡û
>W1711377573
MDZA01000421
Bacteroidota
Hymenobacter coccineus CCM 8649 [MDZA]
10272
10201
-
Cys
GCA
[ENA]
¡û
>W1711377580
MDZB01000062
Bacteroidota
Hymenobacter lapidarius CCM 8643 [MDZB]
38054
37983
-
Cys
GCA
[ENA]
¡û
>W1711377654
MDZC01000101
Bacteroidota
Hymenobacter glacialis CCM 8648 [MDZC]
33345
33274
-
Cys
GCA
[ENA]
¡û
>W1712105590
NIRR01000040
Bacteroidota
Hymenobacter amundsenii CCM 8682 [NIRR]
7201
7274
+
Cys
GCA
[ENA]
¡û
>C181175111
CP029145
Bacteroidota
Hymenobacter nivis NBRC 111535 [CP029145]
2337548
2337477
-
Cys
GCA
-
¡û
>C191154873
CP037922
Bacteroidota
Hymenobacter radiodurans 17J36-26 [CP037922]
1139886
1139957
+
Cys
GCA
-
¡û
>W141734718
JNLX01000127
Bacteroidota
Hymenobacter sp. IS2118 [JNLX]
60683
60612
-
Cys
GCA
[ENA]
¡û
>W1910651894
LYMU01000070
Bacteroidota
Hymenobacter sp. UV11 [LYMU]
213646
213719
+
Cys
GCA
[ENA]
¡û
>W1911788147
QYCN01000006
Bacteroidota
Hymenobacter rubripertinctus CCM 8852 [QYCN]
44468
44397
-
Cys
GCA
[ENA]
¡û
>SRA1003878
SRR002328.3444
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
74
145
+
Cys
GCA
[SRA]
>W1810912390
QVLT01000020
Bacteroidota
Hymenobacter sp. CCM 8763 [QVLT]
22692
22763
+
Cys
GCA
[ENA]
¡û
>SRA1014509
SRR023845.172785
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
183
110
-
Cys
GCA
[SRA]
>SRA1014539
SRR023845.189488
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
2
73
+
Cys
GCA
[SRA]
>W1511582948
LATM01000011
Bacteroidota
Hymenobacter terrenus MIMtkLc17 [LATM]
46840
46769
-
Cys
GCA
[ENA]
¡û
>C161061549
CP013909
Bacteroidota
Hymenobacter sedentarius DG5B [CP013909]
2625537
2625608
+
Cys
GCA
[Ensembl]
¡û
>C161070737
CP014304
Bacteroidota
Hymenobacter sp. PAMC 26628 [CP014304]
3575061
3574990
-
Cys
GCA
[Ensembl]
¡û
>C161077102
CP014771
Bacteroidota
Hymenobacter sp. PAMC 26554 [CP014771]
2459382
2459455
+
Cys
GCA
[Ensembl]
¡û
>W1710530556
FNOV01000004
Bacteroidota
Hymenobacter psychrophilus [FNOV]
309770
309841
+
Cys
GCA
[ENA]
¡û
>W1710553564
FOHS01000001
Bacteroidota
Hymenobacter actinosclerus [FOHS]
1026447
1026518
+
Cys
GCA
[ENA]
¡û
>W1710573754
FOXS01000006
Bacteroidota
Hymenobacter arizonensis [FOXS]
167293
167222
-
Cys
GCA
[ENA]
¡û
>W1710605422
FWWW01000076
Bacteroidota
Hymenobacter roseosalivarius DSM 11622 [FWWW]
26723
26794
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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