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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.417050 (124 seq.)
>W1710860101
LMCP01000018
Alphaproteobacteria
Mesorhizobium sp. Root102 [LMCP]
14627
14700
+
Gly
CCC
[ENA]
¡û
>W1710860606
LMDA01000001
Alphaproteobacteria
Rhizobium sp. Root1212 [LMDA]
957325
957252
-
Gly
CCC
[ENA]
¡û
>W1710864391
LMFV01000023
Alphaproteobacteria
Mesorhizobium sp. Root552 [LMFV]
194060
193987
-
Gly
CCC
[ENA]
¡û
>W1710865032
LMGJ01000001
Alphaproteobacteria
Mesorhizobium sp. Root157 [LMGJ]
78172
78245
+
Gly
CCC
[ENA]
¡û
>W1710866548
LMHO01000005
Alphaproteobacteria
Mesorhizobium sp. Root695 [LMHO]
15887
15960
+
Gly
CCC
[ENA]
¡û
>W1710868515
LMJD01000001
Alphaproteobacteria
Rhizobium sp. Root268 [LMJD]
957544
957471
-
Gly
CCC
[ENA]
¡û
>W1710989560
LPWA01000024
Alphaproteobacteria
Mesorhizobium loti [LPWA]
140943
140870
-
Gly
CCC
[ENA]
¡û
>W1711116378
LUAY01000071
Alphaproteobacteria
Brucella anthropi [LUAY]
39
112
+
Gly
CCC
[ENA]
¡û
>W1711257096
LYTJ01000012
Alphaproteobacteria
Mesorhizobium loti [LYTJ]
922059
921986
-
Gly
CCC
[ENA]
¡û
>W1711257275
LYTO01000001
Alphaproteobacteria
Mesorhizobium sp. AA22 [LYTO]
39561
39634
+
Gly
CCC
[ENA]
¡û
>W131242076
CAAF010000067
Alphaproteobacteria
Mesorhizobium sp. STM 4661 [CAAF]
15396
15469
+
Gly
CCC
[ENA]
¡û
>W131250124
CAUM01000005
Alphaproteobacteria
Mesorhizobium metallidurans STM 2683 [CAUM]
53788
53861
+
Gly
CCC
[ENA]
¡û
>W1711384677
MEDI01000041
Alphaproteobacteria
Kaistia sp. SCN 65-12 [MEDI]
3958
4031
+
Gly
CCC
[ENA]
¡û
>W1711385429
MEEF01000001
Alphaproteobacteria
Mesorhizobium sp. SCN 65-20 [MEEF]
27112
27039
-
Gly
CCC
[ENA]
¡û
>W1711501764
MKRZ01000078
Alphaproteobacteria
Mesorhizobium sp. 61-13 [MKRZ]
10205
10132
-
Gly
CCC
[ENA]
¡û
>W1711606281
MOOY01000008
Alphaproteobacteria
Pararhizobium arenae MIM27 [MOOY]
35594
35667
+
Gly
CCC
[ENA]
¡û
>C171037607
CP015318
Alphaproteobacteria
Mesorhizobium amorphae CCNWGS0123 [CP015318]
1719644
1719571
-
Gly
CCC
-
¡û
>C171083566
CP018780
Alphaproteobacteria
Brucella pituitosa AA2 [CP018779, CP018780, CP018782]
998624
998551
-
Gly
CCC
-
¡û
>C171115471
CP021070
Alphaproteobacteria
Mesorhizobium sp. WSM1497 [CP021070]
6591099
6591172
+
Gly
CCC
-
¡û
>W141025301
AKVI01000024
Alphaproteobacteria
Ochrobactrum sp. CDB2 [AKVI]
28743
28670
-
Gly
CCC
[ENA]
¡û
>WENV180304112
OBJH01044005
[OBJH] soil metagenome; soil
201
274
+
Gly
CCC
[ENA]
¢þ
>W141073793
ASTL01000020
Alphaproteobacteria
Mesorhizobium ciceri ca181 [ASTL]
32792
32865
+
Gly
CCC
[ENA]
¡û
>W141149650
AWZS01000006
Alphaproteobacteria
Mesorhizobium ciceri CMG6 [AWZS]
156039
156112
+
Gly
CCC
[ENA]
¡û
>W141150197
AXAE01000024
Alphaproteobacteria
Mesorhizobium erdmanii USDA 3471 [AXAE]
23502
23575
+
Gly
CCC
[ENA]
¡û
>W141150526
AXAL01000018
Alphaproteobacteria
Mesorhizobium loti CJ3sym [AXAL]
8177
8250
+
Gly
CCC
[ENA]
¡û
>W141197481
AYVK01000012
Alphaproteobacteria
Mesorhizobium sp. LSJC285A00 [AYVK]
179709
179636
-
Gly
CCC
[ENA]
¡û
>W141197533
AYVL01000012
Alphaproteobacteria
Mesorhizobium sp. LSJC280B00 [AYVL]
38578
38505
-
Gly
CCC
[ENA]
¡û
>W141197567
AYVM01000003
Alphaproteobacteria
Mesorhizobium sp. LSJC277A00 [AYVM]
192606
192679
+
Gly
CCC
[ENA]
¡û
>W141197629
AYVN01000006
Alphaproteobacteria
Mesorhizobium sp. LSJC269B00 [AYVN]
21447
21520
+
Gly
CCC
[ENA]
¡û
>W141197670
AYVO01000002
Alphaproteobacteria
Mesorhizobium sp. LSJC268A00 [AYVO]
724447
724520
+
Gly
CCC
[ENA]
¡û
>W141197715
AYVP01000013
Alphaproteobacteria
Mesorhizobium sp. LSJC265A00 [AYVP]
39386
39459
+
Gly
CCC
[ENA]
¡û
>W141197744
AYVQ01000001
Alphaproteobacteria
Mesorhizobium sp. LSJC264A00 [AYVQ]
182190
182117
-
Gly
CCC
[ENA]
¡û
>W141197791
AYVR01000001
Alphaproteobacteria
Mesorhizobium sp. LSJC255A00 [AYVR]
49261
49334
+
Gly
CCC
[ENA]
¡û
>W141197861
AYVS01000006
Alphaproteobacteria
Mesorhizobium sp. LSHC440B00 [AYVS]
63789
63862
+
Gly
CCC
[ENA]
¡û
>W141197901
AYVT01000004
Alphaproteobacteria
Mesorhizobium sp. LSHC440A00 [AYVT]
64446
64519
+
Gly
CCC
[ENA]
¡û
>W141197950
AYVU01000002
Alphaproteobacteria
Mesorhizobium sp. LSHC432A00 [AYVU]
816451
816378
-
Gly
CCC
[ENA]
¡û
>W141198007
AYVV01000005
Alphaproteobacteria
Mesorhizobium sp. LSHC426A00 [AYVV]
377375
377448
+
Gly
CCC
[ENA]
¡û
>W141198063
AYVW01000012
Alphaproteobacteria
Mesorhizobium sp. LSHC424B00 [AYVW]
39346
39419
+
Gly
CCC
[ENA]
¡û
>W141198100
AYVX01000010
Alphaproteobacteria
Mesorhizobium sp. LSHC422A00 [AYVX]
180799
180726
-
Gly
CCC
[ENA]
¡û
>W141198142
AYVY01000010
Alphaproteobacteria
Mesorhizobium sp. LSHC420B00 [AYVY]
111297
111370
+
Gly
CCC
[ENA]
¡û
>W141198181
AYVZ01000003
Alphaproteobacteria
Mesorhizobium sp. LSHC416B00 [AYVZ]
509211
509284
+
Gly
CCC
[ENA]
¡û
>W141198229
AYWA01000003
Alphaproteobacteria
Mesorhizobium sp. LSHC414A00 [AYWA]
161976
162049
+
Gly
CCC
[ENA]
¡û
>W141198289
AYWB01000010
Alphaproteobacteria
Mesorhizobium sp. LSHC412B00 [AYWB]
40519
40592
+
Gly
CCC
[ENA]
¡û
>W141198341
AYWC01000013
Alphaproteobacteria
Mesorhizobium sp. LNJC405B00 [AYWC]
149908
149835
-
Gly
CCC
[ENA]
¡û
>W141198361
AYWD01000001
Alphaproteobacteria
Mesorhizobium sp. LNJC403B00 [AYWD]
863019
863092
+
Gly
CCC
[ENA]
¡û
>W141198434
AYWE01000004
Alphaproteobacteria
Mesorhizobium sp. LNJC399B00 [AYWE]
48966
49039
+
Gly
CCC
[ENA]
¡û
>W141198471
AYWF01000002
Alphaproteobacteria
Mesorhizobium sp. LNJC398B00 [AYWF]
775764
775691
-
Gly
CCC
[ENA]
¡û
>W141198500
AYWG01000002
Alphaproteobacteria
Mesorhizobium sp. LNJC395A00 [AYWG]
21004
21077
+
Gly
CCC
[ENA]
¡û
>W141198574
AYWH01000005
Alphaproteobacteria
Mesorhizobium sp. LNJC394B00 [AYWH]
406883
406810
-
Gly
CCC
[ENA]
¡û
>W141198590
AYWI01000001
Alphaproteobacteria
Mesorhizobium sp. LNJC391B00 [AYWI]
595379
595306
-
Gly
CCC
[ENA]
¡û
>W141198646
AYWJ01000002
Alphaproteobacteria
Mesorhizobium sp. LNJC386A00 [AYWJ]
700913
700986
+
Gly
CCC
[ENA]
¡û
>W141198694
AYWK01000004
Alphaproteobacteria
Mesorhizobium sp. LNJC384A00 [AYWK]
228635
228562
-
Gly
CCC
[ENA]
¡û
>W141198756
AYWL01000004
Alphaproteobacteria
Mesorhizobium sp. LNJC380A00 [AYWL]
181227
181154
-
Gly
CCC
[ENA]
¡û
>W141198814
AYWM01000007
Alphaproteobacteria
Mesorhizobium sp. LNJC374B00 [AYWM]
47114
47187
+
Gly
CCC
[ENA]
¡û
>W141198858
AYWN01000009
Alphaproteobacteria
Mesorhizobium sp. LNJC372A00 [AYWN]
169234
169161
-
Gly
CCC
[ENA]
¡û
>W141198890
AYWO01000004
Alphaproteobacteria
Mesorhizobium sp. LNHC252B00 [AYWO]
49913
49986
+
Gly
CCC
[ENA]
¡û
>W141199206
AYWU01000037
Alphaproteobacteria
Mesorhizobium sp. L48C026A00 [AYWU]
36918
36991
+
Gly
CCC
[ENA]
¡û
>W141199256
AYWV01000020
Alphaproteobacteria
Mesorhizobium sp. L2C089B000 [AYWV]
70403
70476
+
Gly
CCC
[ENA]
¡û
>W141199286
AYWW01000004
Alphaproteobacteria
Mesorhizobium sp. L2C085B000 [AYWW]
402563
402490
-
Gly
CCC
[ENA]
¡û
>W141199349
AYWX01000021
Alphaproteobacteria
Mesorhizobium sp. L2C084A000 [AYWX]
7268
7195
-
Gly
CCC
[ENA]
¡û
>W141199395
AYWY01000012
Alphaproteobacteria
Mesorhizobium sp. L2C067A000 [AYWY]
182599
182526
-
Gly
CCC
[ENA]
¡û
>W141199430
AYWZ01000005
Alphaproteobacteria
Mesorhizobium sp. L2C066B000 [AYWZ]
47647
47720
+
Gly
CCC
[ENA]
¡û
>W141199475
AYXA01000005
Alphaproteobacteria
Mesorhizobium sp. L2C054A000 [AYXA]
227964
227891
-
Gly
CCC
[ENA]
¡û
>W141199507
AYXB01000002
Alphaproteobacteria
Mesorhizobium sp. L103C565B0 [AYXB]
1049143
1049216
+
Gly
CCC
[ENA]
¡û
>W141199586
AYXC01000022
Alphaproteobacteria
Mesorhizobium sp. L103C131B0 [AYXC]
53995
54068
+
Gly
CCC
[ENA]
¡û
>W141199602
AYXD01000004
Alphaproteobacteria
Mesorhizobium sp. L103C120A0 [AYXD]
11340
11413
+
Gly
CCC
[ENA]
¡û
>W141199663
AYXE01000009
Alphaproteobacteria
Mesorhizobium sp. L103C119B0 [AYXE]
163035
162962
-
Gly
CCC
[ENA]
¡û
>W141199719
AYXF01000004
Alphaproteobacteria
Mesorhizobium sp. L103C105A0 [AYXF]
46039
46112
+
Gly
CCC
[ENA]
¡û
>W141216376
AZUV01000009
Alphaproteobacteria
Mesorhizobium sp. WSM1293 [AZUV]
105849
105922
+
Gly
CCC
[ENA]
¡û
>W141216501
AZUX01000051
Alphaproteobacteria
Mesorhizobium sp. WSM2561 [AZUX]
41679
41752
+
Gly
CCC
[ENA]
¡û
>W141275039
JACE01000009
Alphaproteobacteria
Mesorhizobium loti R88b [JACE]
1044740
1044667
-
Gly
CCC
[ENA]
¡û
>W141278327
JAFG01000014
Alphaproteobacteria
Mesorhizobium ciceri WSM4083 [JAFG]
74953
75026
+
Gly
CCC
[ENA]
¡û
>WENV183730356
PJTR01031025
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
284
211
-
Gly
CCC
[ENA]
¢þ
>WENV183733798
PJTY01028190
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
351
424
+
Gly
CCC
[ENA]
¢þ
>WENV170712140
LNFM01010098
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
257
330
+
Gly
CCC
[ENA]
¢þ
>C181129979
CP026265
Alphaproteobacteria
Aminobacter sp. MSH1 [CP026265]
5074085
5074158
+
Gly
CCC
-
¡û
>C181170995
CP028968
Alphaproteobacteria
Aminobacter sp. MSH1 [CP028968]
5073729
5073802
+
Gly
CCC
-
¡û
>C191125508
CP034443
Alphaproteobacteria
Mesorhizobium sp. M9A.F.Ca.ET.002.03.1.2 [CP034443]
2328139
2328066
-
Gly
CCC
-
¡û
>C191125525
CP034444
Alphaproteobacteria
Mesorhizobium sp. M1D.F.Ca.ET.043.01.1.1 [CP034444]
2515618
2515691
+
Gly
CCC
-
¡û
>C191125662
CP034447
Alphaproteobacteria
Mesorhizobium sp. M1E.F.Ca.ET.045.02.1.1 [CP034447]
1006033
1006106
+
Gly
CCC
-
¡û
>C191125712
CP034448
Alphaproteobacteria
Mesorhizobium sp. M1B.F.Ca.ET.045.04.1.1 [CP034448]
25092
25165
+
Gly
CCC
-
¡û
>C191125828
CP034451
Alphaproteobacteria
Mesorhizobium sp. M3A.F.Ca.ET.080.04.2.1 [CP034451]
2610817
2610890
+
Gly
CCC
-
¡û
>W141564182
JIAO01000011
Alphaproteobacteria
Mesorhizobium sp. URHB0007 [JIAO]
837773
837700
-
Gly
CCC
[ENA]
¡û
>W1910374361
FUIG01000013
Alphaproteobacteria
Mesorhizobium delmotii STM 462 [FUIG]
846615
846542
-
Gly
CCC
[ENA]
¡û
>W1910569009
JHUP01000004
Alphaproteobacteria
Mesorhizobium amorphae CCBAU 01583 [JHUP]
755016
755089
+
Gly
CCC
[ENA]
¡û
>W1910840208
MZXV01000032
Alphaproteobacteria
Mesorhizobium kowhaii Ach-343 [MZXV]
59741
59814
+
Gly
CCC
[ENA]
¡û
>W1911084293
NNRI01000007
Alphaproteobacteria
Mesorhizobium sophorae ICMP 19535 [NNRI]
171403
171476
+
Gly
CCC
[ENA]
¡û
>W1911084512
NNRM01000022
Alphaproteobacteria
Brucella pseudogrignonensis CCUG 30717 [NNRM]
186087
186014
-
Gly
CCC
[ENA]
¡û
>W1911155988
NPKH01000001
Alphaproteobacteria
Mesorhizobium wenxiniae WYCCWR 10195 [NPKH]
110888
110815
-
Gly
CCC
[ENA]
¡û
>W1911156075
NPKI01000033
Alphaproteobacteria
Mesorhizobium mediterraneum USDA 3392 [NPKI]
189696
189623
-
Gly
CCC
[ENA]
¡û
>W1911156121
NPKJ01000048
Alphaproteobacteria
Mesorhizobium temperatum SDW018 [NPKJ]
68838
68911
+
Gly
CCC
[ENA]
¡û
>W1911242443
NSFT01000002
Alphaproteobacteria
Mesorhizobium sp. WSM4313 [NSFT]
320267
320340
+
Gly
CCC
[ENA]
¡û
>W1911242807
NSGA01000011
Alphaproteobacteria
Mesorhizobium sp. WSM3876 [NSGA]
55052
54979
-
Gly
CCC
[ENA]
¡û
>W1911405008
NWQG01000045
Alphaproteobacteria
Mesorhizobium sanjuanii BSA136 [NWQG]
38342
38269
-
Gly
CCC
[ENA]
¡û
>W1911565577
PCOD01000001
Alphaproteobacteria
Brucella pseudogrignonensis MYb70 [PCOD]
279070
278997
-
Gly
CCC
[ENA]
¡û
>W1911565723
PCOG01000001
Alphaproteobacteria
Brucella pseudogrignonensis MYb58 [PCOG]
1012396
1012323
-
Gly
CCC
[ENA]
¡û
>W1911565879
PCOK01000001
Alphaproteobacteria
Brucella pseudogrignonensis MYb37 [PCOK]
857492
857565
+
Gly
CCC
[ENA]
¡û
>W1911810743
QYZQ01000001
Alphaproteobacteria
Mesorhizobium sp. DCY119 [QYZQ]
4424888
4424961
+
Gly
CCC
[ENA]
¡û
>W1911824686
QZWZ01000011
Alphaproteobacteria
Mesorhizobium waimense ICMP19557 [QZWZ]
170453
170380
-
Gly
CCC
[ENA]
¡û
>W1810306056
PTRC01000024
Alphaproteobacteria
Brucella oryzae OA447 [PTRC]
129406
129479
+
Gly
CCC
[ENA]
¡û
>W1810390431
PXYL01000006
Alphaproteobacteria
Mesorhizobium soli JCM 19897 [PXYL]
243687
243614
-
Gly
CCC
[ENA]
¡û
>W1810444876
PZJX01000052
Alphaproteobacteria
Mesorhizobium helmanticense CSLC115N [PZJX]
124004
124077
+
Gly
CCC
[ENA]
¡û
>W1810595963
QGGH01000004
Alphaproteobacteria
Mesorhizobium loti DSM 2626 [QGGH]
518854
518781
-
Gly
CCC
[ENA]
¡û
>C11114126
CP002447
Alphaproteobacteria
Mesorhizobium ciceri biovar biserrulae WSM1271 [CP002447]
6189172
6189245
+
Gly
CCC
[Ensembl]
¡û
>C161082360
CP015062
Alphaproteobacteria
Mesorhizobium ciceri CC1192 [CP015062]
5978182
5978109
-
Gly
CCC
[Ensembl]
¡û
>C161082438
CP015064
Alphaproteobacteria
Mesorhizobium ciceri biovar biserrulae WSM1284 [CP015064]
811405
811332
-
Gly
CCC
-
¡û
>C161090745
CP015775
Alphaproteobacteria
Brucella pseudogrignonensis K8 [CP015775, CP015776]
941791
941718
-
Gly
CCC
[Ensembl]
¡û
>W121018077
AGSN01000165
Alphaproteobacteria
Mesorhizobium amorphae CCNWGS0123 [AGSN]
11254
11181
-
Gly
CCC
[ENA]
¡û
>W121059380
AIMB01000006
Alphaproteobacteria
Bartonella tamiae Th239 [AIMB]
5254
5181
-
Gly
CCC
[ENA]
¡û
>W121059608
AIMG01000007
Alphaproteobacteria
Bartonella tamiae Th307 [AIMG]
17892
17965
+
Gly
CCC
[ENA]
¡û
>W1610722447
LMCP01000018
Alphaproteobacteria
Mesorhizobium sp. Root102 [LMCP]
14627
14700
+
Gly
CCC
[ENA]
¡û
>W1610722952
LMDA01000001
Alphaproteobacteria
Rhizobium sp. Root1212 [LMDA]
957325
957252
-
Gly
CCC
[ENA]
¡û
>W1610726737
LMFV01000023
Alphaproteobacteria
Mesorhizobium sp. Root552 [LMFV]
194060
193987
-
Gly
CCC
[ENA]
¡û
>W1610727378
LMGJ01000001
Alphaproteobacteria
Mesorhizobium sp. Root157 [LMGJ]
78172
78245
+
Gly
CCC
[ENA]
¡û
>W1610728894
LMHO01000005
Alphaproteobacteria
Mesorhizobium sp. Root695 [LMHO]
15887
15960
+
Gly
CCC
[ENA]
¡û
>W1610730861
LMJD01000001
Alphaproteobacteria
Rhizobium sp. Root268 [LMJD]
957544
957471
-
Gly
CCC
[ENA]
¡û
>W1610844436
LPWA01000024
Alphaproteobacteria
Mesorhizobium loti [LPWA]
140943
140870
-
Gly
CCC
[ENA]
¡û
>W1610927620
LUAY01000071
Alphaproteobacteria
Brucella anthropi [LUAY]
39
112
+
Gly
CCC
[ENA]
¡û
>W1611020072
LYTJ01000012
Alphaproteobacteria
Mesorhizobium loti [LYTJ]
922059
921986
-
Gly
CCC
[ENA]
¡û
>W1611020292
LYTN01000067
Alphaproteobacteria
Mesorhizobium sp. WSM1497 [LYTN]
55323
55396
+
Gly
CCC
[ENA]
¡û
>W1611020297
LYTO01000001
Alphaproteobacteria
Mesorhizobium sp. AA22 [LYTO]
39561
39634
+
Gly
CCC
[ENA]
¡û
>W1710518708
FNEE01000031
Alphaproteobacteria
Mesorhizobium muleiense [FNEE]
12042
11969
-
Gly
CCC
[ENA]
¡û
>W1710567097
FOSL01000013
Alphaproteobacteria
Mesorhizobium albiziae [FOSL]
61899
61972
+
Gly
CCC
[ENA]
¡û
>W1710578137
FPBI01000009
Alphaproteobacteria
Mesorhizobium sp. YR577 [FPBI]
7771
7698
-
Gly
CCC
[ENA]
¡û
Select
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(Sample source for ENV)
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Representative sequence of each cluster
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