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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.417113 (33 seq.)
>W1711712185
MTBQ01000001
Bacillota
Oceanobacillus rekensis [MTBQ]
417346
417273
-
Gly
TCC
[ENA]
¡û
>W1711712210
MTBQ01000002
Bacillota
Oceanobacillus rekensis [MTBQ]
3399
3472
+
Gly
TCC
[ENA]
¡û
>W1711712217
MTBQ01000003
Bacillota
Oceanobacillus rekensis [MTBQ]
556655
556582
-
Gly
TCC
[ENA]
¡û
>W1711712242
MTBQ01000006
Bacillota
Oceanobacillus rekensis [MTBQ]
252189
252262
+
Gly
TCC
[ENA]
¡û
>WENV170022608
BCQK01026180
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
962
889
-
Gly
TCC
[ENA]
¢þ
>WENV170574556
FLYM01059591
[FLYM] hot springs metagenome; Sediment
290
217
-
Gly
TCC
[ENA]
¢þ
>C181106510
CP024848
Bacillota
Oceanobacillus zhaokaii 160 [CP024848]
622076
622149
+
Gly
TCC
-
¡û
>C181106533
CP024848
Bacillota
Oceanobacillus zhaokaii 160 [CP024848]
911344
911417
+
Gly
TCC
-
¡û
>C181106552
CP024848
Bacillota
Oceanobacillus zhaokaii 160 [CP024848]
1368238
1368311
+
Gly
TCC
-
¡û
>C181106569
CP024848
Bacillota
Oceanobacillus zhaokaii 160 [CP024848]
3842907
3842834
-
Gly
TCC
-
¡û
>C181106572
CP024848
Bacillota
Oceanobacillus zhaokaii 160 [CP024848]
2365664
2365591
-
Gly
TCC
-
¡û
>C181110807
CP025019
Bacillota
Oceanobacillus sp. 143 [CP025019]
621709
621782
+
Gly
TCC
-
¡û
>C181110830
CP025019
Bacillota
Oceanobacillus sp. 143 [CP025019]
910392
910465
+
Gly
TCC
-
¡û
>C181110849
CP025019
Bacillota
Oceanobacillus sp. 143 [CP025019]
1366187
1366260
+
Gly
TCC
-
¡û
>C181110866
CP025019
Bacillota
Oceanobacillus sp. 143 [CP025019]
3835858
3835785
-
Gly
TCC
-
¡û
>C181110869
CP025019
Bacillota
Oceanobacillus sp. 143 [CP025019]
2361294
2361221
-
Gly
TCC
-
¡û
>C181113622
CP025135
Bacillota
Planococcus sp. MB-3u-03 [CP025135]
1248225
1248296
+
Gly
TCC
-
¡û
>W1911118376
NOKQ01000217
Bacillota
Tetzosporium hominis VT-49 [NOKQ]
189043
189116
+
Gly
TCC
[ENA]
¡û
>W1911118400
NOKQ01000276
Bacillota
Tetzosporium hominis VT-49 [NOKQ]
1826
1899
+
Gly
TCC
[ENA]
¡û
>W1911144441
NPBS01000027
Bacillota
Shouchella clausii Feb-23 [NPBS]
37736
37663
-
Gly
TCC
[ENA]
¡û
>W1810048872
PCGR01000001
Bacillota
Chryseomicrobium excrementi ET03 [PCGR]
780
853
+
Gly
TCC
[ENA]
¡û
>W1810048895
PCGR01000004
Bacillota
Chryseomicrobium excrementi ET03 [PCGR]
316
243
-
Gly
TCC
[ENA]
¡û
>W1810066951
PDYM01000004
Bacillota
Sporosarcina sp. P13 [PDYM]
154571
154644
+
Gly
TCC
[ENA]
¡û
>W1810066955
PDYM01000011
Bacillota
Sporosarcina sp. P13 [PDYM]
223
296
+
Gly
TCC
[ENA]
¡û
>W1810680024
QKRH01000063
Bacillota
Bacilli bacterium VT-441 [QKRH]
1507
1580
+
Gly
TCC
[ENA]
¡û
>W1810745326
QOWG01000066
Bacillota
Bacilli bacterium VT-842 [QOWG]
1507
1580
+
Gly
TCC
[ENA]
¡û
>W1511479297
JWIB01000055
Bacillota
Sporosarcina sp. ZBG7A [JWIB]
107
34
-
Gly
TCC
[ENA]
¡û
>W1511479300
JWIB01000062
Bacillota
Sporosarcina sp. ZBG7A [JWIB]
14187
14114
-
Gly
TCC
[ENA]
¡û
>W1610576813
LATY01000004
Bacillota
Shouchella clausii [LATY]
205996
205923
-
Gly
TCC
[ENA]
¡û
>W1710599817
FTPL01000003
Bacillota
Edaphobacillus lindanitolerans [FTPL]
520210
520283
+
Gly
TCC
[ENA]
¡û
>W1710602670
FUYJ01000006
Bacillota
Sporosarcina newyorkensis [FUYJ]
214257
214184
-
Gly
TCC
[ENA]
¡û
>W1710602684
FUYJ01000007
Bacillota
Sporosarcina newyorkensis [FUYJ]
508
435
-
Gly
TCC
[ENA]
¡û
>W1710695302
LATY01000004
Bacillota
Shouchella clausii [LATY]
205996
205923
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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