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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.417134 (107 seq.)
>W1710882441
LMTZ01000013
Cyanobacteriota
Mastigocoleus testarum BC008 [LMTZ]
79796
79726
-
Gly
TCC
[ENA]
¡û
>W1710882466
LMTZ01000086
Cyanobacteriota
Mastigocoleus testarum BC008 [LMTZ]
80497
80567
+
Gly
TCC
[ENA]
¡û
>W1710882899
LMVE01000106
Cyanobacteriota
Cylindrospermopsis sp. CR12 [LMVE]
151277
151347
+
Gly
TCC
[ENA]
¡û
>W1710888851
LNAA01000006
Cyanobacteriota
Oscillatoriales cyanobacterium MTP1 [LNAA]
10813
10743
-
Gly
TCC
[ENA]
¡û
>W131036512
ALVS01000082
Cyanobacteriota
Fischerella sp. PCC 9339 [ALVS]
60312
60382
+
Gly
TCC
[ENA]
¡û
>W131036528
ALVW01000006
Cyanobacteriota
Mastigocladopsis repens PCC 10914 [ALVW]
1929211
1929281
+
Gly
TCC
[ENA]
¡û
>W131058357
ANFJ01000002
Cyanobacteriota
Fortiea contorta PCC 7126 [ANFJ]
185589
185519
-
Gly
TCC
[ENA]
¡û
>W131063284
ANKO01000116
Cyanobacteriota
Oscillatoria sp. PCC 10802 [ANKO]
18328
18398
+
Gly
TCC
[ENA]
¡û
>W1711081294
LSSA01000411
Cyanobacteriota
Nostoc sp. KVJ20 [LSSA]
59281
59211
-
Gly
TCC
[ENA]
¡û
>W1711116526
LUBZ01000010
Cyanobacteriota
Cylindrospermopsis raciborskii ITEP-A1 [LUBZ]
105993
105923
-
Gly
TCC
[ENA]
¡û
>W1711120907
LUHJ01000010
Cyanobacteriota
Anabaena sp. 4-3 [LUHJ]
40393
40463
+
Gly
TCC
[ENA]
¡û
>W1711261791
LYXA01000001
Cyanobacteriota
Cylindrospermopsis raciborskii CS-505 [LYXA]
901359
901289
-
Gly
TCC
[ENA]
¡û
>W1711335581
MBQX01000044
Cyanobacteriota
Cylindrospermopsis raciborskii CS-508 [MBQX]
15834
15764
-
Gly
TCC
[ENA]
¡û
>W1711335633
MBQY01000062
Cyanobacteriota
Cylindrospermopsis raciborskii MVCC14 [MBQY]
102762
102832
+
Gly
TCC
[ENA]
¡û
>W1711335796
MBRD01000033
Cyanobacteriota
Nostoc sp. MBR 210 [MBRD]
245491
245421
-
Gly
TCC
[ENA]
¡û
>W1711577100
MNPM01000032
Cyanobacteriota
Mastigocladus laminosus 74 [MNPM]
45414
45344
-
Gly
TCC
[ENA]
¡û
>W1711666654
MRCE01000001
Cyanobacteriota
Phormidium ambiguum IAM M-71 [MRCE]
285769
285839
+
Gly
TCC
[ENA]
¡û
>W1711666712
MRCF01000005
Cyanobacteriota
Scytonema sp. HK-05 [MRCF]
112972
112902
-
Gly
TCC
[ENA]
¡û
>W1711711336
MTAV01000096
Cyanobacteriota
Nostoc sp. T09 [MTAV]
40161
40091
-
Gly
TCC
[ENA]
¡û
>W1711711377
MTAW01000162
Cyanobacteriota
Nostoc sp. 106C [MTAW]
65872
65802
-
Gly
TCC
[ENA]
¡û
>W1711711469
MTAX01000138
Cyanobacteriota
Nostoc sp. RF31YmG RF31Y [MTAX]
282147
282217
+
Gly
TCC
[ENA]
¡û
>C001211
CP000117
Cyanobacteriota
Trichormus variabilis ATCC 29413 [CP000117]
4023869
4023939
+
Gly
TCC
[Ensembl]
¡û
>C015300
BA000019
Cyanobacteriota
Nostoc sp. PCC 7120 = FACHB-418 [BA000019]
4220131
4220061
-
Gly
TCC
[Ensembl]
¡û
>W141021255
AJLJ01000155
Cyanobacteriota
Fischerella muscicola SAG 1427-1 = PCC 73103 [AJLJ]
4671
4741
+
Gly
TCC
[ENA]
¡û
>w002285
AAAY02000043
Cyanobacteriota
Nostoc punctiforme [AAAY]
1944
1871
-
Gly
TCC
[ENA]
¡û
>W141038490
ALVX01000012
Cyanobacteriota
Fischerella sp. PCC 9431 [ALVX]
198782
198852
+
Gly
TCC
[ENA]
¡û
>W141150837
AXAQ01000103
Cyanobacteriota
Mastigocoleus testarum BC008 [AXAQ]
14244
14174
-
Gly
TCC
[ENA]
¡û
>WENV181847382
OGVY01018939
[OGVY] freshwater metagenome; freshwater
345
275
-
Gly
TCC
[ENA]
¢þ
>WENV181854056
OGWJ01007226
[OGWJ] freshwater metagenome; freshwater
265
195
-
Gly
TCC
[ENA]
¢þ
>C08006954
CP001037
Cyanobacteriota
Nostoc punctiforme PCC 73102 ATCC 29133; PCC 73102 [CP001037]
1055172
1055102
-
Gly
TCC
[Ensembl]
¡û
>WENV170002194
AGSF01000183
[AGSF] microbial mat metagenome; purple microbial (photo and chemo synthetic) mats found in low oxygen high sulfur sink holes
7042
7112
+
Gly
TCC
[ENA]
¢þ
>WENV170002289
AGSF01004911
[AGSF] microbial mat metagenome; purple microbial (photo and chemo synthetic) mats found in low oxygen high sulfur sink holes
462
392
-
Gly
TCC
[ENA]
¢þ
>WENV171003093
NNBT01000491
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
1591
1661
+
Gly
TCC
[ENA]
¢þ
>WENV171003469
NNBU01000054
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
51890
51962
+
Gly
TCC
[ENA]
¢þ
>WENV171003688
NNBV01000184
[NNBV] plant metagenome; symbiotic tissue sample KVS11
2201
2129
-
Gly
TCC
[ENA]
¢þ
>C181004766
AP018172
Cyanobacteriota
Calothrix sp. NIES-2098 [AP018172]
7428131
7428061
-
Gly
TCC
-
¡û
>C181043619
CP020114
Cyanobacteriota
Nodularia spumigena UHCC 0039 [CP020114]
2058404
2058474
+
Gly
TCC
-
¡û
>C181078405
CP023278
Cyanobacteriota
Nostoc sp. CENA543 [CP023278]
2627837
2627907
+
Gly
TCC
-
¡û
>C181105221
CP024785
Cyanobacteriota
Nostoc flagelliforme CCNUN1 [CP024785]
2134985
2135055
+
Gly
TCC
-
¡û
>C181137758
CP026681
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 [CP026681]
1913770
1913700
-
Gly
TCC
-
¡û
>C181137817
CP026692
Cyanobacteriota
Nostoc sp. 'Lobaria pulmonaria [5183] cyanobiont' [CP026692]
6864102
6864032
-
Gly
TCC
-
¡û
>C191001237
AP018318
Cyanobacteriota
Nostoc sp. HK-01 NIES-2109 [AP018318]
2635794
2635864
+
Gly
TCC
-
¡û
>C191083047
CP031941
Cyanobacteriota
Nostoc sphaeroides Kutzing En [CP031941]
5154689
5154759
+
Gly
TCC
-
¡û
>W09101144
AAEA01000002
Cyanobacteriota
Trichormus variabilis ATCC 29413 [AAEA]
139332
139402
+
Gly
TCC
[ENA]
¡û
>W1910008411
BDGE01000066
Cyanobacteriota
Nostoc cycadae WK-1 [BDGE]
9828
9898
+
Gly
TCC
[ENA]
¡û
>W1910020537
BDUD01000001
Cyanobacteriota
Nostoc commune NIES-4072 [BDUD]
1420316
1420246
-
Gly
TCC
[ENA]
¡û
>W1910175495
BJCE01000011
Cyanobacteriota
Sphaerospermopsis reniformis NIES-1949 [BJCE]
33307
33377
+
Gly
TCC
[ENA]
¡û
>W1910596171
LAGX01000003
Cyanobacteriota
Nostoc linckia z1 [LAGX]
230904
230834
-
Gly
TCC
[ENA]
¡û
>W1910596255
LAGY01000002
Cyanobacteriota
Nostoc linckia z2 [LAGY]
231504
231434
-
Gly
TCC
[ENA]
¡û
>W1910596334
LAGZ01000001
Cyanobacteriota
Nostoc linckia z3 [LAGZ]
230937
230867
-
Gly
TCC
[ENA]
¡û
>W1910596440
LAHA01000003
Cyanobacteriota
Nostoc linckia z4 [LAHA]
235717
235647
-
Gly
TCC
[ENA]
¡û
>W1910596496
LAHB01000001
Cyanobacteriota
Nostoc linckia z6 [LAHB]
310112
310042
-
Gly
TCC
[ENA]
¡û
>W1910596580
LAHC01000015
Cyanobacteriota
Nostoc linckia z7 [LAHC]
75299
75229
-
Gly
TCC
[ENA]
¡û
>W1910596661
LAHD01000003
Cyanobacteriota
Nostoc linckia z8 [LAHD]
125917
125847
-
Gly
TCC
[ENA]
¡û
>W1910596822
LAHE01000167
Cyanobacteriota
Nostoc linckia z9 [LAHE]
8572
8502
-
Gly
TCC
[ENA]
¡û
>W1910596900
LAHF01000176
Cyanobacteriota
Nostoc linckia z13 [LAHF]
9555
9485
-
Gly
TCC
[ENA]
¡û
>W1910596987
LAHG01000121
Cyanobacteriota
Nostoc linckia z14 [LAHG]
17362
17432
+
Gly
TCC
[ENA]
¡û
>W1910597070
LAHH01000216
Cyanobacteriota
Nostoc linckia z15 [LAHH]
5763
5833
+
Gly
TCC
[ENA]
¡û
>W1910597087
LAHI01000003
Cyanobacteriota
Nostoc linckia z16 [LAHI]
17223
17293
+
Gly
TCC
[ENA]
¡û
>W1910597177
LAHJ01000003
Cyanobacteriota
Nostoc linckia z18 [LAHJ]
17226
17296
+
Gly
TCC
[ENA]
¡û
>W1910646700
LWSY01000171
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
11716
11786
+
Gly
TCC
[ENA]
¡û
>W1910792644
MRBZ01000014
Cyanobacteriota
Nostoc calcicola FACHB-389 [MRBZ]
56314
56244
-
Gly
TCC
[ENA]
¡û
>W1910805290
MTPU01000058
Cyanobacteriota
Cylindrospermopsis raciborskii CENA302 [MTPU]
60312
60242
-
Gly
TCC
[ENA]
¡û
>W1910842085
NAPS01000001
Cyanobacteriota
Westiellopsis prolifica IICB1 [NAPS]
123474
123404
-
Gly
TCC
[ENA]
¡û
>W1910859258
NBYN01000004
Cyanobacteriota
Cylindrospermopsis raciborskii CENA303 [NBYN]
97899
97969
+
Gly
TCC
[ENA]
¡û
>W1910943184
NJHS01000058
Cyanobacteriota
Cylindrospermopsis raciborskii C07 [NJHS]
15843
15773
-
Gly
TCC
[ENA]
¡û
>W1910943216
NJHT01000063
Cyanobacteriota
Cylindrospermopsis raciborskii C04 [NJHT]
15849
15779
-
Gly
TCC
[ENA]
¡û
>W1910943259
NJHU01000051
Cyanobacteriota
Cylindrospermopsis raciborskii C03 [NJHU]
671
741
+
Gly
TCC
[ENA]
¡û
>W1910943303
NJHV01000433
Cyanobacteriota
Cylindrospermopsis raciborskii S14 [NJHV]
15705
15635
-
Gly
TCC
[ENA]
¡û
>W1910943333
NJHW01000049
Cyanobacteriota
Cylindrospermopsis raciborskii S10 [NJHW]
15813
15743
-
Gly
TCC
[ENA]
¡û
>W1910943371
NJHX01000036
Cyanobacteriota
Cylindrospermopsis raciborskii S07 [NJHX]
649
719
+
Gly
TCC
[ENA]
¡û
>W1910943417
NJHY01000052
Cyanobacteriota
Cylindrospermopsis raciborskii S06 [NJHY]
16991
16921
-
Gly
TCC
[ENA]
¡û
>W1910943458
NJHZ01000071
Cyanobacteriota
Cylindrospermopsis raciborskii S05 [NJHZ]
15833
15763
-
Gly
TCC
[ENA]
¡û
>W1910943495
NJIA01000071
Cyanobacteriota
Cylindrospermopsis raciborskii S01 [NJIA]
15833
15763
-
Gly
TCC
[ENA]
¡û
>W1911118749
NOLJ01000005
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 210A [NOLJ]
301330
301400
+
Gly
TCC
[ENA]
¡û
>W1911153711
NPIL01000001
Cyanobacteriota
Cylindrospermopsis raciborskii CYRF [NPIL]
825750
825680
-
Gly
TCC
[ENA]
¡û
>W1911244273
NSHF01000193
Cyanobacteriota
Nostoc sp. 'Peltigera malacea cyanobiont' DB3992 [NSHF]
1626
1556
-
Gly
TCC
[ENA]
¡û
>W1911244290
NSHF01000585
Cyanobacteriota
Nostoc sp. 'Peltigera malacea cyanobiont' DB3992 [NSHF]
92
162
+
Gly
TCC
[ENA]
¡û
>W1911426118
NXIB02000102
Cyanobacteriota
Tychonema bourrellyi FEM_GT703 [NXIB]
249
320
+
Gly
TCC
[ENA]
¡û
>W1810355676
PVMC01000075
Cyanobacteriota
Cylindrospermopsis raciborskii Cr2010 [PVMC]
48703
48633
-
Gly
TCC
[ENA]
¡û
>W10106044
ACYA01000073
Cyanobacteriota
Cylindrospermopsis raciborskii CS-505 [ACYA]
15959
15889
-
Gly
TCC
[ENA]
¡û
>W10106057
ACYB01000020
Cyanobacteriota
Raphidiopsis brookii D9 [ACYB]
23785
23855
+
Gly
TCC
[ENA]
¡û
>W11108367
ACYA01000073
Cyanobacteriota
Cylindrospermopsis raciborskii CS-505 [ACYA]
15959
15889
-
Gly
TCC
[ENA]
¡û
>W11108380
ACYB01000020
Cyanobacteriota
Raphidiopsis brookii D9 [ACYB]
23785
23855
+
Gly
TCC
[ENA]
¡û
>W1511501664
JXCA01000010
Cyanobacteriota
Scytonema tolypothrichoides VB-61278 [JXCA]
46722
46792
+
Gly
TCC
[ENA]
¡û
>W1511501714
JXCB01000007
Cyanobacteriota
Tolypothrix campylonemoides VB511288 [JXCB]
141471
141541
+
Gly
TCC
[ENA]
¡û
>W1511504576
JXIJ01000094
Cyanobacteriota
Mastigocladus laminosus UU774 [JXIJ]
45414
45344
-
Gly
TCC
[ENA]
¡û
>C161002528
AP017295
Cyanobacteriota
Nostoc sp. NIES-3756 [AP017295]
3972606
3972536
-
Gly
TCC
[Ensembl]
¡û
>C161038919
CP012036
Cyanobacteriota
Nostoc piscinale CENA21 [CP012036]
4345820
4345750
-
Gly
TCC
[Ensembl]
¡û
>W1610003525
AGCR01000012
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
43943
43873
-
Gly
TCC
[ENA]
¡û
>W1610084887
CDHJ01000309
Cyanobacteriota
Umezakia ovalisporum [CDHJ]
28645
28572
-
Gly
TCC
[ENA]
¡û
>C131004164
CP003548
Cyanobacteriota
Nostoc sp. PCC 7107 [CP003548]
4482036
4481966
-
Gly
TCC
[Ensembl]
¡û
>C131004277
CP003552
Cyanobacteriota
Nostoc sp. PCC 7524 [CP003552]
6516263
6516333
+
Gly
TCC
[Ensembl]
¡û
>C131004815
CP003620
Cyanobacteriota
Crinalium epipsammum PCC 9333 [CP003620]
4383150
4383220
+
Gly
TCC
[Ensembl]
¡û
>C131010304
CP003943
Cyanobacteriota
Calothrix sp. PCC 7507 [CP003943]
5454115
5454187
+
Gly
TCC
[Ensembl]
¡û
>W1610656780
LJOR01000002
Cyanobacteriota
Anabaena sp. 39858 [LJOR]
45158
45088
-
Gly
TCC
[ENA]
¡û
>W1610744367
LMTZ01000013
Cyanobacteriota
Mastigocoleus testarum BC008 [LMTZ]
79796
79726
-
Gly
TCC
[ENA]
¡û
>W1610744392
LMTZ01000086
Cyanobacteriota
Mastigocoleus testarum BC008 [LMTZ]
80497
80567
+
Gly
TCC
[ENA]
¡û
>W1610744825
LMVE01000106
Cyanobacteriota
Cylindrospermopsis sp. CR12 [LMVE]
151277
151347
+
Gly
TCC
[ENA]
¡û
>W1610749229
LNAA01000006
Cyanobacteriota
Oscillatoriales cyanobacterium MTP1 [LNAA]
10813
10743
-
Gly
TCC
[ENA]
¡û
>W1610927768
LUBZ01000010
Cyanobacteriota
Cylindrospermopsis raciborskii ITEP-A1 [LUBZ]
105993
105923
-
Gly
TCC
[ENA]
¡û
>W1610932127
LUHI01000046
Cyanobacteriota
Anabaena sp. CA = ATCC 33047 [LUHI]
27203
27133
-
Gly
TCC
[ENA]
¡û
>W1610932144
LUHJ01000010
Cyanobacteriota
Anabaena sp. 4-3 [LUHJ]
40393
40463
+
Gly
TCC
[ENA]
¡û
>W1611023766
LYXA01000001
Cyanobacteriota
Cylindrospermopsis raciborskii CS-505 [LYXA]
901359
901289
-
Gly
TCC
[ENA]
¡û
>W1611066503
MBRD01000033
Cyanobacteriota
Nostoc sp. MBR 210 [MBRD]
245491
245421
-
Gly
TCC
[ENA]
¡û
>W1710004145
AGCR01000012
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
43943
43873
-
Gly
TCC
[ENA]
¡û
>W1710089749
CDHJ01000309
Cyanobacteriota
Umezakia ovalisporum [CDHJ]
28645
28572
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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