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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.417264 (71 seq.)
>W1710873091
LMMN01000010
Alphaproteobacteria
Methylobacterium sp. Leaf90 [LMMN]
67235
67162
-
Gln
CTG
[ENA]
¡û
>W1710873236
LMMQ01000023
Alphaproteobacteria
Methylobacterium sp. Leaf92 [LMMQ]
33329
33256
-
Gln
CTG
[ENA]
¡û
>W1710874483
LMNQ01000014
Alphaproteobacteria
Methylobacterium sp. Leaf122 [LMNQ]
45436
45509
+
Gln
CTG
[ENA]
¡û
>W1710878289
LMQV01000007
Alphaproteobacteria
Methylobacterium sp. Leaf456 [LMQV]
114193
114120
-
Gln
CTG
[ENA]
¡û
>W1711078684
LSNC01000046
Alphaproteobacteria
Methylorubrum populi [LSNC]
44225
44298
+
Gln
CTG
[ENA]
¡û
>W131166467
ARCM01000003
Alphaproteobacteria
Ancylobacter sp. FA202 [ARCM]
1256236
1256309
+
Gln
CTG
[ENA]
¡û
>W131170073
ARFG01000005
Alphaproteobacteria
Neomegalonema perideroedes DSM 15528 [ARFG]
337034
337107
+
Gln
CTG
[ENA]
¡û
>W131175699
ARJL01000003
Alphaproteobacteria
Xanthobacteraceae bacterium 501b [ARJL]
2229569
2229496
-
Gln
CTG
[ENA]
¡û
>W131180151
ARMX01000032
Alphaproteobacteria
Novispirillum itersonii subsp. itersonii ATCC 12639 [ARMX]
181016
181089
+
Gln
CTG
[ENA]
¡û
>W1711229785
LXYS01000004
Alphaproteobacteria
Bartonella apis [LXYS]
463822
463895
+
Gln
CTG
[ENA]
¡û
>W1711229822
LXYT01000002
Alphaproteobacteria
Bartonella apis [LXYT]
423496
423569
+
Gln
CTG
[ENA]
¡û
>W1711229860
LXYU01000002
Alphaproteobacteria
Bartonella apis [LXYU]
438961
439034
+
Gln
CTG
[ENA]
¡û
>W131222254
AUBC01000022
Alphaproteobacteria
Salinarimonas rosea DSM 21201 [AUBC]
6234
6307
+
Gln
CTG
[ENA]
¡û
>W131227837
AUFM01000011
Alphaproteobacteria
Nisaea denitrificans DSM 18348 [AUFM]
1625193
1625266
+
Gln
CTG
[ENA]
¡û
>W1711571772
MNAO01000413
Alphaproteobacteria
Methylorubrum extorquens [MNAO]
2717
2644
-
Gln
CTG
[ENA]
¡û
>C171040337
CP015625
Alphaproteobacteria
Bartonella choladocola BBC0122 [CP015625]
624238
624165
-
Gln
CTG
-
¡û
>C171041723
CP015820
Alphaproteobacteria
Bartonella apihabitans BBC0178 [CP015820]
620025
619952
-
Gln
CTG
-
¡û
>C171041769
CP015821
Alphaproteobacteria
Bartonella apihabitans BBC0244 [CP015821]
631223
631150
-
Gln
CTG
-
¡û
>WENV180099036
MTBK01283295
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
362
289
-
Gln
CTG
[ENA]
¢þ
>w001826
AAAP01003110
Alphaproteobacteria
Paramagnetospirillum magnetotacticum [AAAP]
1324
1254
-
Gln
CTG
[ENA]
¡û
>WENV180692055
OCZS010328077
[OCZS] soil metagenome; soil
98
171
+
Gln
CTG
[ENA]
¢þ
>WENV180695117
OCZS013061539
[OCZS] soil metagenome; soil
178
105
-
Gln
CTG
[ENA]
¢þ
>W08002413
ABEX01000010
Alphaproteobacteria
Methylorubrum extorquens CM4 [ABEX]
162349
162279
-
Gln
CTG
[ENA]
¡û
>WENV181234043
OFET01001128
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
8698
8771
+
Gln
CTG
[ENA]
¢þ
>WENV181234368
OFEU01000071
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
138554
138627
+
Gln
CTG
[ENA]
¢þ
>W141148471
AWXZ01000006
Alphaproteobacteria
Lutibaculum baratangense AMV1 [AWXZ]
618
545
-
Gln
CTG
[ENA]
¡û
>W141241681
CAHM01000067
Alphaproteobacteria
Microvirga massiliensis JC119 [CAHM]
2477
2550
+
Gln
CTG
[ENA]
¡û
>C08006647
CP001029
Alphaproteobacteria
Methylorubrum populi BJ001 [CP001029]
5197229
5197302
+
Gln
CTG
[Ensembl]
¡û
>WENV183627767
OOGL01042030
[OOGL] marine metagenome; sea ice
231
304
+
Gln
CTG
[ENA]
¢þ
>WENV183746550
POYE01006166
[POYE] biofilm metagenome; steel pipe from biofilm reactor
368
441
+
Gln
CTG
[ENA]
¢þ
>ENV08001914
ABOK01009227
mosquito metagenome; viral fraction from Mung bean nuclease digestion of DNA from mixed species mosquitoes collected in Mission Valley in San Diego, CA
84
11
-
Gln
CTG
[ENA]
¡û
>ENV08001919
ABOK01017442
mosquito metagenome; viral fraction from Mung bean nuclease digestion of DNA from mixed species mosquitoes collected in Mission Valley in San Diego, CA
90
17
-
Gln
CTG
[ENA]
¡û
>WENV170152062
CEOE01028403
[CEOE] marine metagenome genome assembly TARA_025_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1033
1106
+
Gln
CTG
[ENA]
¢þ
>WENV170909884
MDTE01084230
[MDTE] marine metagenome; seawater
2400
2327
-
Gln
CTG
[ENA]
¢þ
>WENV170963149
MRWG01000022
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
213989
214062
+
Gln
CTG
[ENA]
¢þ
>C181000360
AP014809
Alphaproteobacteria
Methylorubrum populi P-1M [AP014809]
5019093
5019166
+
Gln
CTG
-
¡û
>C181097334
CP024199
Alphaproteobacteria
Thalassospira marina CSC3H3 [CP024199]
1203793
1203720
-
Gln
CTG
-
¡û
>C181175647
CP029173
Alphaproteobacteria
Methylobacterium sp. DM1 [CP029173]
5028766
5028839
+
Gln
CTG
-
¡û
>C181227877
LT962688
Alphaproteobacteria
Methylorubrum extorquens TK 0001 [LT962688]
976875
976802
-
Gln
CTG
-
¡û
>W09106830
ABEC01000001
Alphaproteobacteria
Methylorubrum extorquens PA1 [ABEC]
356964
357037
+
Gln
CTG
[ENA]
¡û
>W09107190
ABFR01000008
Alphaproteobacteria
Methylorubrum populi BJ001 [ABFR]
90321
90394
+
Gln
CTG
[ENA]
¡û
>W1910547477
FZNU01000014
Alphaproteobacteria
Tistlia consotensis DSM 21585 [FZNU]
78224
78297
+
Gln
CTG
[ENA]
¡û
>W1911410085
NWTK01000001
Alphaproteobacteria
Thalassospira marina CSC1P2 [NWTK]
623179
623106
-
Gln
CTG
[ENA]
¡û
>W1810658561
QJJJ01000025
Alphaproteobacteria
Methylobacterium sp. B4 [QJJJ]
57743
57816
+
Gln
CTG
[ENA]
¡û
>W1810658579
QJJK01000003
Alphaproteobacteria
Chelatococcus asaccharovorans DSM 6462 [QJJK]
105592
105519
-
Gln
CTG
[ENA]
¡û
>W1810706693
QMKH01000007
Alphaproteobacteria
Microvirga flavescens c27j1 [QMKH]
167330
167257
-
Gln
CTG
[ENA]
¡û
>SRA1014548
SRR023845.193770
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
84
11
-
Gln
CTG
[SRA]
>C151099608
HE663493
Alphaproteobacteria
Pararhodospirillum photometricum DSM 122 [HE663493]
998195
998122
-
Gln
CTG
[Ensembl]
¡û
>C151099609
HE663493
Alphaproteobacteria
Pararhodospirillum photometricum DSM 122 [HE663493]
998067
997994
-
Gln
CTG
[Ensembl]
¡û
>W1510081372
CDSD01000090
Alphaproteobacteria
Microvirga massiliensis JC119 [CDSD]
60601
60528
-
Gln
CTG
[ENA]
¡û
>C161004976
CP006992
Alphaproteobacteria
Methylobacterium sp. AMS5 [CP006992]
4688027
4688100
+
Gln
CTG
[Ensembl]
¡û
>W121010654
AGJK01000001
Alphaproteobacteria
Methylorubrum extorquens DSM 13060 [AGJK]
34783
34710
-
Gln
CTG
[ENA]
¡û
>W121010673
AGJK01000058
Alphaproteobacteria
Methylorubrum extorquens DSM 13060 [AGJK]
25644
25717
+
Gln
CTG
[ENA]
¡û
>W1610042983
BAZM01001913
Alphaproteobacteria
Methylorubrum rhodinum JCM 2811 [BAZM]
268
341
+
Gln
CTG
[ENA]
¡û
>W1610043194
BAZP01002295
Alphaproteobacteria
Methylorubrum thiocyanatum JCM 10893 [BAZP]
332
259
-
Gln
CTG
[ENA]
¡û
>W1610516207
FMBM01000002
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [FMBM]
2358918
2358991
+
Gln
CTG
[ENA]
¡û
>W1610735437
LMMN01000010
Alphaproteobacteria
Methylobacterium sp. Leaf90 [LMMN]
67235
67162
-
Gln
CTG
[ENA]
¡û
>W1610735582
LMMQ01000023
Alphaproteobacteria
Methylobacterium sp. Leaf92 [LMMQ]
33329
33256
-
Gln
CTG
[ENA]
¡û
>W1610736829
LMNQ01000014
Alphaproteobacteria
Methylobacterium sp. Leaf122 [LMNQ]
45436
45509
+
Gln
CTG
[ENA]
¡û
>W1610736920
LMNS01000023
Alphaproteobacteria
Methylobacterium sp. Leaf123 [LMNS]
16842
16769
-
Gln
CTG
[ENA]
¡û
>W1610740635
LMQV01000007
Alphaproteobacteria
Methylobacterium sp. Leaf456 [LMQV]
114193
114120
-
Gln
CTG
[ENA]
¡û
>W1610917594
LSNC01000046
Alphaproteobacteria
Methylorubrum populi [LSNC]
44225
44298
+
Gln
CTG
[ENA]
¡û
>W1710040143
BAZM01001913
Alphaproteobacteria
Methylorubrum rhodinum JCM 2811 [BAZM]
268
341
+
Gln
CTG
[ENA]
¡û
>W1710040354
BAZP01002295
Alphaproteobacteria
Methylorubrum thiocyanatum JCM 10893 [BAZP]
332
259
-
Gln
CTG
[ENA]
¡û
>W1710505311
FMTP01000004
Alphaproteobacteria
Ancylobacter rudongensis [FMTP]
464682
464755
+
Gln
CTG
[ENA]
¡û
>W1710514010
FNAP01000005
Alphaproteobacteria
Rhodospira trueperi [FNAP]
8893
8820
-
Gln
CTG
[ENA]
¡û
>W1710598530
FTOA01000012
Alphaproteobacteria
Insolitispirillum peregrinum [FTOA]
19034
19107
+
Gln
CTG
[ENA]
¡û
>W1710607232
FWZX01000002
Alphaproteobacteria
Tistlia consotensis [FWZX]
329684
329611
-
Gln
CTG
[ENA]
¡û
>W1710616529
JFJZ01000006
Alphaproteobacteria
Thalassospira sp. MCCC 1A01428 [JFJZ]
104660
104587
-
Gln
CTG
[ENA]
¡û
>W1710616614
JFKA01000012
Alphaproteobacteria
Thalassospira mesophila [JFKA]
83340
83413
+
Gln
CTG
[ENA]
¡û
>W1710636870
JRJD01000001
Alphaproteobacteria
Thalassospira sp. TSL5-1 [JRJD]
856596
856523
-
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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