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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.417269 (58 seq.)
>W1711102677
LTNX01000058
Actinomycetota
Actinomyces sp. HMSC035G02 [LTNX]
3075
3002
-
Gly
CCC
[ENA]
¡û
>WENV180007765
FLSA01274901
[FLSA] metagenome; saliva
73
1
-
Gly
CCC
[ENA]
¢þ
>WENV180697895
ODDE01009510
[ODDE] human metagenome; G_DNA_Supragingival plaque
300
228
-
Gly
CCC
[ENA]
¢þ
>WENV180726560
ODGU01000111
[ODGU] human metagenome; G_DNA_Supragingival plaque
55842
55770
-
Gly
CCC
[ENA]
¢þ
>WENV180733508
ODGZ01000137
[ODGZ] human metagenome; G_DNA_Supragingival plaque
48744
48672
-
Gly
CCC
[ENA]
¢þ
>WENV180735561
ODHB01000029
[ODHB] human metagenome; G_DNA_Supragingival plaque
61673
61601
-
Gly
CCC
[ENA]
¢þ
>WENV180735946
ODHB01002105
[ODHB] human metagenome; G_DNA_Supragingival plaque
4625
4554
-
Gly
CCC
[ENA]
¢þ
>WENV180739061
ODHD01003968
[ODHD] human metagenome; G_DNA_Supragingival plaque
2705
2777
+
Gly
CCC
[ENA]
¢þ
>WENV180755050
ODHU01009788
[ODHU] human metagenome; G_DNA_Supragingival plaque
967
1038
+
Gly
CCC
[ENA]
¢þ
>WENV180774249
ODIJ01014446
[ODIJ] human metagenome; G_DNA_Tongue dorsum
2064
2137
+
Gly
CCC
[ENA]
¢þ
>WENV180795949
ODJB01000684
[ODJB] human metagenome; G_DNA_Supragingival plaque
17829
17757
-
Gly
CCC
[ENA]
¢þ
>WENV180796354
ODJB01003644
[ODJB] human metagenome; G_DNA_Supragingival plaque
3186
3259
+
Gly
CCC
[ENA]
¢þ
>WENV180801146
ODJD01009781
[ODJD] human metagenome; G_DNA_Supragingival plaque
235
308
+
Gly
CCC
[ENA]
¢þ
>WENV180852503
ODKW01001506
[ODKW] human metagenome; G_DNA_Tongue dorsum
2636
2563
-
Gly
CCC
[ENA]
¢þ
>WENV180852618
ODKW01002761
[ODKW] human metagenome; G_DNA_Tongue dorsum
5855
5927
+
Gly
CCC
[ENA]
¢þ
>WENV180858099
ODLC01000780
[ODLC] human metagenome; G_DNA_Tongue dorsum
13298
13370
+
Gly
CCC
[ENA]
¢þ
>WENV180858195
ODLC01001654
[ODLC] human metagenome; G_DNA_Tongue dorsum
4267
4340
+
Gly
CCC
[ENA]
¢þ
>WENV180901632
ODOK01001033
[ODOK] human metagenome; G_DNA_Tongue dorsum
5674
5747
+
Gly
CCC
[ENA]
¢þ
>WENV180901740
ODOK01002112
[ODOK] human metagenome; G_DNA_Tongue dorsum
5022
5095
+
Gly
CCC
[ENA]
¢þ
>WENV180901955
ODOK01009415
[ODOK] human metagenome; G_DNA_Tongue dorsum
241
169
-
Gly
CCC
[ENA]
¢þ
>WENV180902460
ODOK01061635
[ODOK] human metagenome; G_DNA_Tongue dorsum
227
299
+
Gly
CCC
[ENA]
¢þ
>WENV180924328
ODTK01003395
[ODTK] human metagenome; G_DNA_Supragingival plaque
6084
6011
-
Gly
CCC
[ENA]
¢þ
>WENV180927180
ODTM01000039
[ODTM] human metagenome; G_DNA_Supragingival plaque
56088
56016
-
Gly
CCC
[ENA]
¢þ
>WENV180928456
ODTM01052209
[ODTM] human metagenome; G_DNA_Supragingival plaque
73
1
-
Gly
CCC
[ENA]
¢þ
>WENV180929430
ODTN01002717
[ODTN] human metagenome; G_DNA_Tongue dorsum
436
364
-
Gly
CCC
[ENA]
¢þ
>WENV180929647
ODTN01007571
[ODTN] human metagenome; G_DNA_Tongue dorsum
2161
2088
-
Gly
CCC
[ENA]
¢þ
>WENV180938128
ODTX01000698
[ODTX] human metagenome; G_DNA_Supragingival plaque
10782
10709
-
Gly
CCC
[ENA]
¢þ
>WENV180939267
ODTX01022733
[ODTX] human metagenome; G_DNA_Supragingival plaque
1495
1567
+
Gly
CCC
[ENA]
¢þ
>WENV180939782
ODTX01088920
[ODTX] human metagenome; G_DNA_Supragingival plaque
450
522
+
Gly
CCC
[ENA]
¢þ
>WENV180945947
ODUD01000865
[ODUD] human metagenome; G_DNA_Tongue dorsum
7354
7281
-
Gly
CCC
[ENA]
¢þ
>WENV180973067
ODUW01001069
[ODUW] human metagenome; G_DNA_Supragingival plaque
11554
11481
-
Gly
CCC
[ENA]
¢þ
>WENV180973551
ODUW01008003
[ODUW] human metagenome; G_DNA_Supragingival plaque
75
2
-
Gly
CCC
[ENA]
¢þ
>WENV180973697
ODUW01013343
[ODUW] human metagenome; G_DNA_Supragingival plaque
719
792
+
Gly
CCC
[ENA]
¢þ
>WENV181058225
ODYL01005513
[ODYL] human metagenome; G_DNA_Tongue dorsum
641
568
-
Gly
CCC
[ENA]
¢þ
>WENV181058928
ODYL01053644
[ODYL] human metagenome; G_DNA_Tongue dorsum
451
379
-
Gly
CCC
[ENA]
¢þ
>WENV181090328
OEBC01000193
[OEBC] human metagenome; G_DNA_Supragingival plaque
12381
12453
+
Gly
CCC
[ENA]
¢þ
>WENV181108052
OEEI01070313
[OEEI] human metagenome; G_DNA_Supragingival plaque
306
234
-
Gly
CCC
[ENA]
¢þ
>WENV181135064
OEGG01002367
[OEGG] human metagenome; G_DNA_Tongue dorsum
4786
4858
+
Gly
CCC
[ENA]
¢þ
>WENV181135100
OEGG01002915
[OEGG] human metagenome; G_DNA_Tongue dorsum
1093
1020
-
Gly
CCC
[ENA]
¢þ
>WENV181155780
OEIE01000048
[OEIE] human metagenome; G_DNA_Supragingival plaque
3141
3213
+
Gly
CCC
[ENA]
¢þ
>WENV181156261
OEIE01007195
[OEIE] human metagenome; G_DNA_Supragingival plaque
1828
1755
-
Gly
CCC
[ENA]
¢þ
>WENV181175526
OEJQ01005068
[OEJQ] human metagenome; G_DNA_Tongue dorsum
1732
1659
-
Gly
CCC
[ENA]
¢þ
>WENV181179165
OEJT01001707
[OEJT] human metagenome; G_DNA_Supragingival plaque
5193
5266
+
Gly
CCC
[ENA]
¢þ
>WENV181181013
OEJU01003156
[OEJU] human metagenome; G_DNA_Supragingival plaque
1
73
+
Gly
CCC
[ENA]
¢þ
>WENV181427420
OGCQ01084843
[OGCQ] human gut metagenome; human gut
530
603
+
Gly
CCC
[ENA]
¢þ
>W141143118
AWSB01000025
Actinomycetota
Actinobaculum sp. oral taxon 183 oral taxon 183 str. F0552 [AWSB]
56622
56551
-
Gly
CCC
[ENA]
¡û
>WENV183135911
OLOE01026232
[OLOE] human gut metagenome; faeces
453
526
+
Gly
CCC
[ENA]
¢þ
>C183000477
CP017696
Actinomycetota
Bifidobacterium asteroides DSM 20089 [CP017696]
2105178
2105249
+
Gly
CCC
-
¡û
>W09134710
ACUY01000007
Actinomycetota
Actinomyces sp. oral taxon 848 oral taxon 848 str. F0332 [ACUY]
57198
57125
-
Gly
CCC
[ENA]
¡û
>C151090564
CP012072
Actinomycetota
Schaalia meyeri W712 [CP012072]
1956530
1956457
-
Gly
CCC
-
¡û
>C153000165
CP006018
Actinomycetota
Bifidobacterium indicum LMG 11587 = DSM 20214 [CP006018]
121662
121733
+
Gly
CCC
[Ensembl]
¡û
>C153000324
CP007287
Actinomycetota
Bifidobacterium coryneforme LMG18911 [CP007287]
115568
115639
+
Gly
CCC
[Ensembl]
¡û
>W1610074502
BCWS01000007
Actinomycetota
Arachnia propionica NBRC 14587 [BCWS]
110594
110521
-
Gly
CCC
[ENA]
¡û
>C133000056
CP003325
Actinomycetota
Bifidobacterium asteroides PRL2011 [CP003325]
157109
157180
+
Gly
CCC
[Ensembl]
¡û
>W1630009148
JDTU01000030
Actinomycetota
Bifidobacterium asteroides DSM 20089 [JDTU]
33696
33767
+
Gly
CCC
[ENA]
¡û
>W1630009185
JDUE01000006
Actinomycetota
Bifidobacterium indicum LMG 11587 = DSM 20214 [JDUE]
16986
16915
-
Gly
CCC
[ENA]
¡û
>W1630009192
JDUF01000018
Actinomycetota
Bifidobacterium coryneforme DSM 20216 [JDUF]
24626
24555
-
Gly
CCC
[ENA]
¡û
>W1710071620
BCWS01000007
Actinomycetota
Arachnia propionica NBRC 14587 [BCWS]
110594
110521
-
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK