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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.417674 (92 seq.)
>W1710996734
LQBR01000001
Gammaproteobacteria
Microbulbifer sp. ZGT114 [LQBR]
918165
918238
+
Cys
GCA
[ENA]
¡û
>W131061286
ANIN01000002
Gammaproteobacteria
Moraxella macacae 408225 [ANIN]
725288
725215
-
Cys
GCA
[ENA]
¡û
>W1711029523
LRFG01000001
Gammaproteobacteria
Microbulbifer flavimaris WRN-8 [LRFG]
918165
918238
+
Cys
GCA
[ENA]
¡û
>W1711047366
LROY01000002
Gammaproteobacteria
Microbulbifer sp. Q7 [LROY]
974423
974350
-
Cys
GCA
[ENA]
¡û
>W131162209
AQYJ01000025
Gammaproteobacteria
Microbulbifer variabilis ATCC 700307 [AQYJ]
196580
196653
+
Cys
GCA
[ENA]
¡û
>W131165646
ARBT01000003
Gammaproteobacteria
Moraxella boevrei DSM 14165 [ARBT]
85020
84947
-
Cys
GCA
[ENA]
¡û
>W131180919
ARNM01000050
Gammaproteobacteria
Solimonas variicoloris DSM 15731 [ARNM]
279114
279041
-
Cys
GCA
[ENA]
¡û
>W1711174385
LWEE01000010
Gammaproteobacteria
Halioglobus sp. HI00S01 [LWEE]
162862
162935
+
Cys
GCA
[ENA]
¡û
>W1711224227
LXTW01000032
Gammaproteobacteria
Moraxella nonliquefaciens [LXTW]
526782
526855
+
Cys
GCA
[ENA]
¡û
>W1711268562
LZDB01000002
Gammaproteobacteria
Perlucidibaca aquatica BK296 [LZDB]
762147
762074
-
Cys
GCA
[ENA]
¡û
>W1711268648
LZDE01000341
Gammaproteobacteria
Microbulbifer mangrovi [LZDE]
437
510
+
Cys
GCA
[ENA]
¡û
>W1711268997
LZDM01000023
Gammaproteobacteria
Moraxella nonliquefaciens [LZDM]
522875
522948
+
Cys
GCA
[ENA]
¡û
>W1711269011
LZDN01000001
Gammaproteobacteria
Moraxella nonliquefaciens [LZDN]
504117
504190
+
Cys
GCA
[ENA]
¡û
>W131221155
AUAF01000037
Gammaproteobacteria
Zooshikella ganghwensis DSM 15267 [AUAF]
11816
11743
-
Cys
GCA
[ENA]
¡û
>W131228303
AUFV01000001
Gammaproteobacteria
Solimonas flava DSM 18980 [AUFV]
473760
473687
-
Cys
GCA
[ENA]
¡û
>W131228765
AUGF01000011
Gammaproteobacteria
Moraxella caprae DSM 19149 [AUGF]
39633
39706
+
Cys
GCA
[ENA]
¡û
>W1711765787
MUXV01000030
Gammaproteobacteria
Moraxella bovis [MUXV]
27611
27684
+
Cys
GCA
[ENA]
¡û
>W1711799954
MXAP01000162
Gammaproteobacteria
Moraxella equi [MXAP]
10281
10354
+
Cys
GCA
[ENA]
¡û
>C171030193
CP014143
Gammaproteobacteria
Microbulbifer aggregans CCB-MM1 [CP014143]
2815895
2815822
-
Cys
GCA
-
¡û
>C171094598
CP019450
Gammaproteobacteria
Halioglobus japonicus NBRC 107739 [CP019450]
2433737
2433810
+
Cys
GCA
-
¡û
>C171097787
CP019650
Gammaproteobacteria
Microbulbifer agarilyticus GP101 [CP019650]
1994970
1994897
-
Cys
GCA
-
¡û
>WENV180226185
OBBP01081969
[OBBP] human oral metagenome; human oral
208
135
-
Cys
GCA
[ENA]
¢þ
>WENV180357969
OBNO01034946
[OBNO] marine metagenome; ENVO 00002150
280
353
+
Cys
GCA
[ENA]
¢þ
>WENV180379964
OBOP01234572
[OBOP] marine metagenome; water
308
235
-
Cys
GCA
[ENA]
¢þ
>W141055116
AOMT01000005
Gammaproteobacteria
Moraxella bovoculi 237 [AOMT]
447407
447480
+
Cys
GCA
[ENA]
¡û
>WENV180711409
ODFN01002447
[ODFN] human metagenome; G_DNA_Anterior nares
94
167
+
Cys
GCA
[ENA]
¢þ
>WENV180793947
ODIX01002312
[ODIX] human metagenome; G_DNA_Anterior nares
138
211
+
Cys
GCA
[ENA]
¢þ
>WENV180878954
ODLY01011456
[ODLY] human metagenome; G_DNA_Anterior nares
136
63
-
Cys
GCA
[ENA]
¢þ
>WENV180937570
ODTW01014851
[ODTW] human metagenome; G_DNA_Anterior nares
82
155
+
Cys
GCA
[ENA]
¢þ
>WENV180966783
ODUR01008808
[ODUR] human metagenome; G_DNA_Anterior nares
334
261
-
Cys
GCA
[ENA]
¢þ
>WENV180972555
ODUV01010642
[ODUV] human metagenome; G_DNA_Anterior nares
19
92
+
Cys
GCA
[ENA]
¢þ
>WENV180984647
ODVI01000006
[ODVI] human metagenome; G_DNA_Anterior nares
44443
44370
-
Cys
GCA
[ENA]
¢þ
>WENV181114119
OEEO01000120
[OEEO] human metagenome; G_DNA_Supragingival plaque
26120
26047
-
Cys
GCA
[ENA]
¢þ
>WENV181400566
OFSF01010860
[OFSF] wastewater metagenome; Exp Tend VB 100WW
564
637
+
Cys
GCA
[ENA]
¢þ
>WENV182548669
OJBX01000003
[OJBX] seawater metagenome; Sea water
119567
119640
+
Cys
GCA
[ENA]
¢þ
>WENV182552617
OJCM01002089
[OJCM] seawater metagenome; Sea water
242
169
-
Cys
GCA
[ENA]
¢þ
>WENV182554868
OJCX01000389
[OJCX] seawater metagenome; Sea water
736
663
-
Cys
GCA
[ENA]
¢þ
>WENV182576008
OJFX01001344
[OJFX] seawater metagenome; Sea water
6195
6268
+
Cys
GCA
[ENA]
¢þ
>WENV182579793
OJGU01000005
[OJGU] seawater metagenome; Sea water
168124
168051
-
Cys
GCA
[ENA]
¢þ
>WENV182581203
OJGX01000774
[OJGX] seawater metagenome; Sea water
11734
11807
+
Cys
GCA
[ENA]
¢þ
>WENV182591440
OJIO01000064
[OJIO] seawater metagenome; Sea water
83722
83795
+
Cys
GCA
[ENA]
¢þ
>WENV183062053
OLID01000001
[OLID] seawater metagenome; Sea water
362883
362810
-
Cys
GCA
[ENA]
¢þ
>WENV183708475
PDWI01016521
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1309
1236
-
Cys
GCA
[ENA]
¢þ
>WENV183714942
PDWI01212213
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
467
394
-
Cys
GCA
[ENA]
¢þ
>WENV183796265
PVBE010233207
[PVBE] marine metagenome; water
64248
64321
+
Cys
GCA
[ENA]
¢þ
>WENV183801889
PVBE010713189
[PVBE] marine metagenome; water
64586
64659
+
Cys
GCA
[ENA]
¢þ
>WENV170270734
CERI01114962
[CERI] marine metagenome genome assembly TARA_067_SRF_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1124
1197
+
Cys
GCA
[ENA]
¢þ
>WENV170315687
CESO01211679
[CESO] marine metagenome genome assembly TARA_093_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
338
265
-
Cys
GCA
[ENA]
¢þ
>W141425773
JELR01000001
Gammaproteobacteria
Microbulbifer sp. HZ11 [JELR]
730386
730459
+
Cys
GCA
[ENA]
¡û
>WENV170567097
FLLY01046211
[FLLY] seawater metagenome; seawater
433
360
-
Cys
GCA
[ENA]
¢þ
>WENV170599487
FUWD010076872
[FUWD] metagenome; unknown
265
192
-
Cys
GCA
[ENA]
¢þ
>WENV170782167
MAAC01009537
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
57088
57015
-
Cys
GCA
[ENA]
¢þ
>WENV170802252
MDSW01010247
[MDSW] marine metagenome; seawater
21652
21579
-
Cys
GCA
[ENA]
¢þ
>WENV170836786
MDSZ01137384
[MDSZ] marine metagenome; seawater
813
740
-
Cys
GCA
[ENA]
¢þ
>WENV170917598
MDTE01194736
[MDTE] marine metagenome; seawater
13069
12996
-
Cys
GCA
[ENA]
¢þ
>WENV170938889
MDTG01316540
[MDTG] marine metagenome; seawater
1489
1416
-
Cys
GCA
[ENA]
¢þ
>WENV170947575
MEHZ010759216
[MEHZ] marine metagenome; marine surface water
349
276
-
Cys
GCA
[ENA]
¢þ
>WENV170962065
MRWF01004621
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
2073
2000
-
Cys
GCA
[ENA]
¢þ
>WENV170963301
MRWG01000087
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
64350
64277
-
Cys
GCA
[ENA]
¢þ
>C181173127
CP029064
Gammaproteobacteria
Microbulbifer sp. A4B17 [CP029064]
2739177
2739250
+
Cys
GCA
-
¡û
>C181190901
CP030241
Gammaproteobacteria
Moraxella bovis [CP030241]
943198
943125
-
Cys
GCA
-
¡û
>C191008775
CP011380
Gammaproteobacteria
Moraxella bovoculi 57922 [CP011380]
1151218
1151291
+
Cys
GCA
-
¡û
>W1910977042
NKHK01000045
Gammaproteobacteria
Moraxella sp. VT-16-12 [NKHK]
2322
2395
+
Cys
GCA
[ENA]
¡û
>W1911748763
QWEZ01000001
Gammaproteobacteria
Aestuariirhabdus litorea GTF13 [QWEZ]
1389311
1389238
-
Cys
GCA
[ENA]
¡û
>W1810196383
PKUR01000002
Gammaproteobacteria
Halioglobus japonicus S1-36 [PKUR]
1008117
1008190
+
Cys
GCA
[ENA]
¡û
>W1810270735
PREV01000027
Gammaproteobacteria
Microbulbifer pacificus LD25 [PREV]
1045115
1045042
-
Cys
GCA
[ENA]
¡û
>W1810779426
QQOH01000001
Gammaproteobacteria
Motiliproteus coralliicola C34 [QQOH]
828655
828582
-
Cys
GCA
[ENA]
¡û
>W1810784212
QRAN01000003
Gammaproteobacteria
Seongchinamella sediminis U0301 [QRAN]
112070
111997
-
Cys
GCA
[ENA]
¡û
>W1810885962
QUNR01000004
Gammaproteobacteria
Paraperlucidibaca baekdonensis DSM 26022 [QUNR]
192037
191964
-
Cys
GCA
[ENA]
¡û
>SRA1050755
SRR035096.15620
454 Sequencing (SRP001817)
275
202
-
Cys
GCA
[SRA]
>W11170297
AFPJ01000007
Gammaproteobacteria
Microbulbifer agarilyticus S89 [AFPJ]
135044
135117
+
Cys
GCA
[ENA]
¡û
>C161034446
CP011374
Gammaproteobacteria
Moraxella bovoculi 58069 [CP011374]
1182860
1182933
+
Cys
GCA
[Ensembl]
¡û
>C161034518
CP011376
Gammaproteobacteria
Moraxella bovoculi 22581 [CP011376]
1118876
1118803
-
Cys
GCA
-
¡û
>C161034543
CP011377
Gammaproteobacteria
Moraxella bovoculi 23343 [CP011377]
1159434
1159507
+
Cys
GCA
-
¡û
>C161034592
CP011378
Gammaproteobacteria
Moraxella bovoculi 28389 [CP011378]
1266901
1266974
+
Cys
GCA
[Ensembl]
¡û
>C161034643
CP011379
Gammaproteobacteria
Moraxella bovoculi 33362 [CP011379]
1189698
1189771
+
Cys
GCA
-
¡û
>C161034697
CP011381
Gammaproteobacteria
Moraxella bovoculi 58086 [CP011381]
1145289
1145362
+
Cys
GCA
-
¡û
>C161078689
CP014864
Gammaproteobacteria
Microbulbifer thermotolerans DAU221 [CP014864]
2001843
2001916
+
Cys
GCA
[Ensembl]
¡û
>W1610076292
BCYQ01000011
Gammaproteobacteria
Moraxella oblonga NBRC 102422 [BCYQ]
22839
22912
+
Cys
GCA
[ENA]
¡û
>W1610851391
LQBR01000001
Gammaproteobacteria
Microbulbifer sp. ZGT114 [LQBR]
918165
918238
+
Cys
GCA
[ENA]
¡û
>W1610877791
LRFG01000001
Gammaproteobacteria
Microbulbifer flavimaris WRN-8 [LRFG]
918165
918238
+
Cys
GCA
[ENA]
¡û
>W1610888495
LROY01000002
Gammaproteobacteria
Microbulbifer sp. Q7 [LROY]
974423
974350
-
Cys
GCA
[ENA]
¡û
>W1610982698
LWEE01000010
Gammaproteobacteria
Halioglobus sp. HI00S01 [LWEE]
162862
162935
+
Cys
GCA
[ENA]
¡û
>W1611008598
LXTW01000032
Gammaproteobacteria
Moraxella nonliquefaciens [LXTW]
526782
526855
+
Cys
GCA
[ENA]
¡û
>W1611029528
LZDB01000002
Gammaproteobacteria
Perlucidibaca aquatica BK296 [LZDB]
762147
762074
-
Cys
GCA
[ENA]
¡û
>W1611029809
LZDM01000023
Gammaproteobacteria
Moraxella nonliquefaciens [LZDM]
522875
522948
+
Cys
GCA
[ENA]
¡û
>W1611029823
LZDN01000001
Gammaproteobacteria
Moraxella nonliquefaciens [LZDN]
504117
504190
+
Cys
GCA
[ENA]
¡û
>W1710074107
BCYQ01000011
Gammaproteobacteria
Moraxella oblonga NBRC 102422 [BCYQ]
22839
22912
+
Cys
GCA
[ENA]
¡û
>W1710520072
FNFH01000003
Gammaproteobacteria
Microbulbifer yueqingensis [FNFH]
367915
367988
+
Cys
GCA
[ENA]
¡û
>W1710532732
FNQO01000001
Gammaproteobacteria
Microbulbifer marinus [FNQO]
439057
438984
-
Cys
GCA
[ENA]
¡û
>W1710557185
FOKT01000002
Gammaproteobacteria
Microbulbifer thermotolerans [FOKT]
227048
227121
+
Cys
GCA
[ENA]
¡û
>W1710583709
FQVA01000001
Gammaproteobacteria
Microbulbifer donghaiensis [FQVA]
134312
134239
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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