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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.417744 (71 seq.)
>W1710991635
LPXV01000027
Bacillota
Levilactobacillus brevis [LPXV]
1146
1074
-
Trp
CCA
[ENA]
¡û
>W1711005241
LQNG01000002
Bacillota
Levilactobacillus brevis [LQNG]
90786
90714
-
Trp
CCA
[ENA]
¡û
>W131184919
ARTH01000082
Bacillota
Levilactobacillus parabrevis ATCC 53295 [ARTH]
735
807
+
Trp
CCA
[ENA]
¡û
>W1711373181
MDUA01000001
Bacillota
Levilactobacillus brevis [MDUA]
74231
74159
-
Trp
CCA
[ENA]
¡û
>W1711748629
MULL01000001
Bacillota
Levilactobacillus brevis [MULL]
1487609
1487537
-
Trp
CCA
[ENA]
¡û
>C171051211
CP016797
Bacillota
Levilactobacillus brevis TMW 1.2112 [CP016797]
872495
872567
+
Trp
CCA
-
¡û
>C171099174
CP019734
Bacillota
Levilactobacillus brevis TMW 1.2108 [CP019734]
1708313
1708241
-
Trp
CCA
-
¡û
>C171099236
CP019743
Bacillota
Levilactobacillus brevis TMW 1.2111 [CP019743]
1712443
1712371
-
Trp
CCA
-
¡û
>C171099268
CP019750
Bacillota
Levilactobacillus brevis TMW 1.2113 [CP019750]
870364
870436
+
Trp
CCA
-
¡û
>C171119553
CP021479
Bacillota
Levilactobacillus brevis SRCM101174 [CP021479]
1601176
1601104
-
Trp
CCA
-
¡û
>W141086251
AUTD01000033
Bacillota
Levilactobacillus brevis EW [AUTD]
1146
1074
-
Trp
CCA
[ENA]
¡û
>W141146273
AWVK01000029
Bacillota
Levilactobacillus brevis ATCC 14869 = DSM 20054 [AWVK]
26129
26057
-
Trp
CCA
[ENA]
¡û
>W141279937
JAGR01000001
Bacillota
Levilactobacillus brevis AG48 [JAGR]
2040966
2041038
+
Trp
CCA
[ENA]
¡û
>WENV170659364
JXWR01004193
[JXWR] soil metagenome; rice field; ambient CO2
2165
2093
-
Trp
CCA
[ENA]
¢þ
>C181103372
CP024635
Bacillota
Levilactobacillus brevis BDGP6 [CP024635]
2731164
2731236
+
Trp
CCA
-
¡û
>C181211343
LS483405
Bacillota
Levilactobacillus brevis NCTC13768 [LS483405]
1624663
1624591
-
Trp
CCA
-
¡û
>C191074007
CP031169
Bacillota
Levilactobacillus brevis UCCLBBS124 [CP031169]
1694883
1694811
-
Trp
CCA
-
¡û
>C191074067
CP031174
Bacillota
Levilactobacillus brevis UCCLB556 [CP031174]
1540746
1540674
-
Trp
CCA
-
¡û
>C191074096
CP031182
Bacillota
Levilactobacillus brevis UCCLB95 [CP031182]
808041
808113
+
Trp
CCA
-
¡û
>C191074188
CP031185
Bacillota
Levilactobacillus brevis SA-C12 [CP031185]
1621344
1621272
-
Trp
CCA
-
¡û
>C191074251
CP031198
Bacillota
Levilactobacillus brevis UCCLBBS449 [CP031198]
1715072
1715000
-
Trp
CCA
-
¡û
>C191074309
CP031208
Bacillota
Levilactobacillus brevis UCCLB521 [CP031208]
1468963
1468891
-
Trp
CCA
-
¡û
>C191114457
CP033885
Bacillota
Levilactobacillus brevis LMT1-73 [CP033885]
2116770
2116698
-
Trp
CCA
-
¡û
>W1910176796
BJDG01000036
Bacillota
Lactiplantibacillus pingfangensis 382-1 [BJDG]
81
154
+
Trp
CCA
[ENA]
¡û
>W1910176838
BJDH01000005
Bacillota
Lactiplantibacillus daoliensis 116-1A [BJDH]
82
155
+
Trp
CCA
[ENA]
¡û
>W1910176890
BJDI01000027
Bacillota
Lactiplantibacillus nangangensis 381-7 [BJDI]
10202
10129
-
Trp
CCA
[ENA]
¡û
>W1910176968
BJDK01000016
Bacillota
Lactiplantibacillus dongliensis 218-3 [BJDK]
379
452
+
Trp
CCA
[ENA]
¡û
>W1910177016
BJDL01000007
Bacillota
Lactiplantibacillus songbeiensis 398-2 [BJDL]
379
452
+
Trp
CCA
[ENA]
¡û
>W1910177665
BJDY01000001
Bacillota
Lactiplantibacillus mudanjiangensis 11050 [BJDY]
298
371
+
Trp
CCA
[ENA]
¡û
>W1910181331
BJLW01000095
Bacillota
Levilactobacillus brevis NBRC 3960 [BJLW]
2376
2304
-
Trp
CCA
[ENA]
¡û
>W1910181441
BJLZ01000054
Bacillota
Levilactobacillus brevis NBRC 12005 [BJLZ]
3575
3503
-
Trp
CCA
[ENA]
¡û
>W1910182185
BJMR01000038
Bacillota
Levilactobacillus brevis NBRC 13110 [BJMR]
18003
17931
-
Trp
CCA
[ENA]
¡û
>W1910230970
FPCL01000153
Bacillota
Levilactobacillus brevis [FPCL]
695
767
+
Trp
CCA
[ENA]
¡û
>W1910231025
FPCM01000182
Bacillota
Levilactobacillus brevis [FPCM]
695
767
+
Trp
CCA
[ENA]
¡û
>W1910231052
FPCN01000076
Bacillota
Levilactobacillus brevis [FPCN]
695
767
+
Trp
CCA
[ENA]
¡û
>W1910231120
FPCO01000131
Bacillota
Levilactobacillus brevis [FPCO]
695
767
+
Trp
CCA
[ENA]
¡û
>W1910231179
FPCQ01000126
Bacillota
Levilactobacillus brevis [FPCQ]
695
767
+
Trp
CCA
[ENA]
¡û
>W1910922887
NIGK01000009
Bacillota
Levilactobacillus brevis ZG1 [NIGK]
59837
59765
-
Trp
CCA
[ENA]
¡û
>W1810000926
BEWS01000021
Bacillota
Levilactobacillus brevis NBRC 3345 [BEWS]
568
640
+
Trp
CCA
[ENA]
¡û
>W1810699083
QMCB01000034
Bacillota
Levilactobacillus brevis TUCO-5E [QMCB]
9939
9867
-
Trp
CCA
[ENA]
¡û
>W1810705788
QMJO01000060
Bacillota
Levilactobacillus brevis KMB_615 [QMJO]
9574
9502
-
Trp
CCA
[ENA]
¡û
>W1810780431
QQPA01000079
Bacillota
Levilactobacillus brevis WIKIM12 [QQPA]
114481
114409
-
Trp
CCA
[ENA]
¡û
>W1510013588
BBOW01000079
Bacillota
Levilactobacillus brevis WK12 [BBOW]
114481
114409
-
Trp
CCA
[ENA]
¡û
>W1511270456
JOKA01000026
Bacillota
Levilactobacillus brevis DmCS_003 [JOKA]
83
155
+
Trp
CCA
[ENA]
¡û
>W1511501828
JXCD01000078
Bacillota
Levilactobacillus brevis 15f [JXCD]
1684
1612
-
Trp
CCA
[ENA]
¡û
>W1511512281
JXUE01000015
Bacillota
Levilactobacillus brevis TMW 1.6 [JXUE]
1833810
1833882
+
Trp
CCA
[ENA]
¡û
>W1511512422
JXUG01000021
Bacillota
Levilactobacillus brevis TMW 1.465 [JXUG]
123379
123307
-
Trp
CCA
[ENA]
¡û
>W1511591566
LBHR01000040
Bacillota
Levilactobacillus brevis 47f [LBHR]
646
718
+
Trp
CCA
[ENA]
¡û
>C161086949
CP015398
Bacillota
Levilactobacillus brevis NPS-QW-145 [CP015398]
1907041
1906969
-
Trp
CCA
-
¡û
>W1610031135
AYYO01000050
Bacillota
Lacticaseibacillus sharpeae JCM 1186 = DSM 20505 [AYYO]
1683
1755
+
Trp
CCA
[ENA]
¡û
>W1610032193
AYZK01000013
Bacillota
Lacticaseibacillus thailandensis DSM 22698 = JCM 13996 [AYZK]
7255
7183
-
Trp
CCA
[ENA]
¡û
>W1610033478
AZCZ01000015
Bacillota
Levilactobacillus parabrevis ATCC 53295 [AZCZ]
237
309
+
Trp
CCA
[ENA]
¡û
>W1610036549
AZFJ01000042
Bacillota
Lacticaseibacillus pantheris DSM 15945 = JCM 12539 = NBRC 106106 [AZFJ]
7460
7388
-
Trp
CCA
[ENA]
¡û
>W1610043870
BBAC01000014
Bacillota
Lacticaseibacillus sharpeae JCM 1186 = DSM 20505 [BBAC]
1642
1714
+
Trp
CCA
[ENA]
¡û
>W1610044193
BBAI01000059
Bacillota
Lacticaseibacillus pantheris DSM 15945 = JCM 12539 = NBRC 106106 [BBAI]
7407
7335
-
Trp
CCA
[ENA]
¡û
>W1610073176
BCVS01000109
Bacillota
Lacticaseibacillus pantheris DSM 15945 = JCM 12539 = NBRC 106106 [BCVS]
167
239
+
Trp
CCA
[ENA]
¡û
>C131000208
AP012167
Bacillota
Levilactobacillus brevis KB290 [AP012167]
1490393
1490321
-
Trp
CCA
[Ensembl]
¡û
>W1610529369
JQCA01000126
Bacillota
Levilactobacillus paucivorans [JQCA]
846
918
+
Trp
CCA
[ENA]
¡û
>W1610529758
JQCI01000015
Bacillota
Levilactobacillus parabrevis [JQCI]
61417
61345
-
Trp
CCA
[ENA]
¡û
>W1610529931
JQCL01000074
Bacillota
Lactiplantibacillus xiangfangensis [JQCL]
255459
255386
-
Trp
CCA
[ENA]
¡û
>W1610585907
LDEI01000001
Bacillota
Levilactobacillus brevis [LDEI]
254557
254485
-
Trp
CCA
[ENA]
¡û
>W1610855891
LQNG01000002
Bacillota
Levilactobacillus brevis [LQNG]
90786
90714
-
Trp
CCA
[ENA]
¡û
>W1710028087
AYYO01000050
Bacillota
Lacticaseibacillus sharpeae JCM 1186 = DSM 20505 [AYYO]
1683
1755
+
Trp
CCA
[ENA]
¡û
>W1710029120
AYZK01000013
Bacillota
Lacticaseibacillus thailandensis DSM 22698 = JCM 13996 [AYZK]
7255
7183
-
Trp
CCA
[ENA]
¡û
>W1710033588
AZFJ01000042
Bacillota
Lacticaseibacillus pantheris DSM 15945 = JCM 12539 = NBRC 106106 [AZFJ]
7460
7388
-
Trp
CCA
[ENA]
¡û
>W1710041030
BBAC01000014
Bacillota
Lacticaseibacillus sharpeae JCM 1186 = DSM 20505 [BBAC]
1642
1714
+
Trp
CCA
[ENA]
¡û
>W1710041353
BBAI01000059
Bacillota
Lacticaseibacillus pantheris DSM 15945 = JCM 12539 = NBRC 106106 [BBAI]
7407
7335
-
Trp
CCA
[ENA]
¡û
>W1710070294
BCVS01000109
Bacillota
Lacticaseibacillus pantheris DSM 15945 = JCM 12539 = NBRC 106106 [BCVS]
167
239
+
Trp
CCA
[ENA]
¡û
>W1710630959
JQCA01000126
Bacillota
Levilactobacillus paucivorans [JQCA]
846
918
+
Trp
CCA
[ENA]
¡û
>W1710631348
JQCI01000015
Bacillota
Levilactobacillus parabrevis [JQCI]
61417
61345
-
Trp
CCA
[ENA]
¡û
>W1710631521
JQCL01000074
Bacillota
Lactiplantibacillus xiangfangensis [JQCL]
255459
255386
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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