This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.417750 (17 seq.)
>W1710797168
LJSV01000001
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCA12 [LJSV]
204292
204365
+
Gly
TCC
[ENA]
¡û
>C171064553
CP017622
Alphaproteobacteria
Ketogulonicigenium vulgare SPU B805 [CP017622]
2365015
2364942
-
Gly
TCC
-
¡û
>C171101161
CP019937
Alphaproteobacteria
Ketogulonicigenium robustum SPU_B003 [CP019937]
1764139
1764066
-
Gly
TCC
-
¡û
>WENV180298459
OBJA01355155
[OBJA] soil metagenome; sediment, water from around vicinity
139
66
-
Gly
TCC
[ENA]
¢þ
>WENV181233690
OFET01000045
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
204188
204261
+
Gly
TCC
[ENA]
¢þ
>W1911652503
QBBT01000028
Alphaproteobacteria
Pseudooceanicola algae Lw-13e [QBBT]
42350
42423
+
Gly
TCC
[ENA]
¡û
>SRA1003984
SRR002328.71533
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
203
130
-
Gly
TCC
[SRA]
>W1810583986
QEYD01000006
Alphaproteobacteria
Pararhodobacter marinus CIC4N-9 [QEYD]
301094
301167
+
Gly
TCC
[ENA]
¡û
>W1810603219
QGKU01000026
Alphaproteobacteria
Meridianimarinicoccus roseus TG-679 [QGKU]
122689
122762
+
Gly
TCC
[ENA]
¡û
>C11111833
CP002018
Alphaproteobacteria
Ketogulonicigenium vulgare WSH-001 [CP002018]
1821524
1821451
-
Gly
TCC
[Ensembl]
¡û
>C11111885
CP002224
Alphaproteobacteria
Ketogulonicigenium vulgare Y25 [CP002224]
2106809
2106736
-
Gly
TCC
[Ensembl]
¡û
>C161047277
CP012908
Alphaproteobacteria
Ketogulonicigenium vulgare Hbe602 [CP012908]
2212033
2211960
-
Gly
TCC
-
¡û
>C161100004
CP016592
Alphaproteobacteria
Ketogulonicigenium vulgare SKV [CP016592]
2210969
2210896
-
Gly
TCC
-
¡û
>W1610661125
LJSV01000001
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCA12 [LJSV]
204292
204365
+
Gly
TCC
[ENA]
¡û
>W1710015581
AQQU01000005
Alphaproteobacteria
Oceanicola sp. 22II-s10i [AQQU]
161826
161899
+
Gly
TCC
[ENA]
¡û
>W1710539017
FNUZ01000004
Alphaproteobacteria
Thalassococcus halodurans [FNUZ]
236840
236913
+
Gly
TCC
[ENA]
¡û
>W1710558447
FOLX01000001
Alphaproteobacteria
Pseudooceanicola nitratireducens [FOLX]
1509685
1509758
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK