This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.418371 (114 seq.)
>W131170027
ARFF01000016
Bacteroidota
Niabella aurantiaca DSM 17617 [ARFF]
24832
24905
+
Trp
CCA
[ENA]
¡û
>W1711168541
LVYD01000054
Bacteroidota
Niastella vici [LVYD]
132905
132834
-
Trp
CCA
[ENA]
¡û
>W1711171979
LWBP01000204
Bacteroidota
Niastella populi [LWBP]
9215
9288
+
Trp
CCA
[ENA]
¡û
>W131220008
ATZA01000004
Bacteroidota
Olivibacter sitiensis DSM 17696 [ATZA]
104505
104432
-
Trp
CCA
[ENA]
¡û
>W131229764
AUHA01000002
Bacteroidota
Daejeonella oryzae DSM 19973 [AUHA]
11930
11859
-
Trp
CCA
[ENA]
¡û
>W1711502866
MKTC01000014
Bacteroidota
Bacteroidetes bacterium 37-13 [MKTC]
13007
13078
+
Trp
CCA
[ENA]
¡û
>W1711506278
MKWG01000037
Bacteroidota
Sphingobacteriales bacterium 44-15 [MKWG]
258517
258444
-
Trp
CCA
[ENA]
¡û
>WENV180209706
OBAL01014982
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
470
541
+
Trp
CCA
[ENA]
¢þ
>WENV180284533
OBID01053190
[OBID] metagenome; sludge
149
78
-
Trp
CCA
[ENA]
¢þ
>WENV180297855
OBJA01100980
[OBJA] soil metagenome; sediment, water from around vicinity
256
329
+
Trp
CCA
[ENA]
¢þ
>WENV180388186
OBPG01079493
[OBPG] marine metagenome; Sterile flask
370
299
-
Trp
CCA
[ENA]
¢þ
>WENV180691584
OCZS010158735
[OCZS] soil metagenome; soil
528
599
+
Trp
CCA
[ENA]
¢þ
>WENV017555
AACY020486573
Marine microbial communities from Global Ocean Sampling (GOS)
941
1014
+
Trp
CCA
[ENA]
>WENV181307854
OFIS01000005
[OFIS] sludge metagenome; sludge
461021
461092
+
Trp
CCA
[ENA]
¢þ
>WENV181312360
OFJB01094474
[OFJB] sludge metagenome; sludge
90
161
+
Trp
CCA
[ENA]
¢þ
>WENV181368405
OFQL01003190
[OFQL] freshwater metagenome; Freshwater Lake
1213
1142
-
Trp
CCA
[ENA]
¢þ
>WENV181368908
OFQN01003280
[OFQN] freshwater metagenome; Freshwater Lake
1426
1497
+
Trp
CCA
[ENA]
¢þ
>WENV181369451
OFQP01002382
[OFQP] freshwater metagenome; Freshwater Lake
588
517
-
Trp
CCA
[ENA]
¢þ
>WENV181369943
OFQR01002809
[OFQR] freshwater metagenome; Freshwater Lake
561
490
-
Trp
CCA
[ENA]
¢þ
>WENV181370315
OFQS01003056
[OFQS] freshwater metagenome; Freshwater Lake
387
316
-
Trp
CCA
[ENA]
¢þ
>WENV181370675
OFQT01002728
[OFQT] freshwater metagenome; Freshwater Lake
620
691
+
Trp
CCA
[ENA]
¢þ
>WENV181402030
OFTY01000045
[OFTY] sludge metagenome; sludge
15883
15812
-
Trp
CCA
[ENA]
¢þ
>WENV181402218
OFTY01000257
[OFTY] sludge metagenome; sludge
17550
17479
-
Trp
CCA
[ENA]
¢þ
>WENV181836895
OGVJ01044734
[OGVJ] freshwater metagenome; freshwater
202
131
-
Trp
CCA
[ENA]
¢þ
>WENV181846183
OGVX01024904
[OGVX] freshwater metagenome; freshwater
635
706
+
Trp
CCA
[ENA]
¢þ
>WENV181853522
OGWI01011190
[OGWI] freshwater metagenome; freshwater
415
344
-
Trp
CCA
[ENA]
¢þ
>WENV183092927
OLLO01000351
[OLLO] soil metagenome; soil
1569
1643
+
Trp
CCA
[ENA]
¢þ
>WENV183736290
PJUC01000422
[PJUC] soil metagenome; Soil enriched on filter paper
1802
1873
+
Trp
CCA
[ENA]
¢þ
>WENV183740654
PJUF01005450
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
970
899
-
Trp
CCA
[ENA]
¢þ
>WENV170551477
CXWJ01008964
[CXWJ] wastewater metagenome; activated sludge
1776
1849
+
Trp
CCA
[ENA]
¢þ
>WENV170606270
FUWD010639141
[FUWD] metagenome; unknown
235
162
-
Trp
CCA
[ENA]
¢þ
>WENV170955392
MJUJ01049385
[MJUJ] soil metagenome; viral particles from soil sample CN
1297
1224
-
Trp
CCA
[ENA]
¢þ
>WENV170981195
MWVT01041114
[MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil
775
702
-
Trp
CCA
[ENA]
¢þ
>WENV170981746
MWVT01194459
[MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil
316
245
-
Trp
CCA
[ENA]
¢þ
>WENV170984855
MWVW01000751
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
4836
4763
-
Trp
CCA
[ENA]
¢þ
>WENV170984887
MWVW01001761
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
1342
1415
+
Trp
CCA
[ENA]
¢þ
>WENV170984965
MWVW01005905
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
1331
1405
+
Trp
CCA
[ENA]
¢þ
>WENV170985063
MWVW01016407
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
474
403
-
Trp
CCA
[ENA]
¢þ
>WENV170985678
MWVX01000440
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
11426
11353
-
Trp
CCA
[ENA]
¢þ
>WENV170985980
MWVX01010040
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
1500
1571
+
Trp
CCA
[ENA]
¢þ
>WENV170986131
MWVX01017423
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
21
95
+
Trp
CCA
[ENA]
¢þ
>WENV170986352
MWVX01032708
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
421
492
+
Trp
CCA
[ENA]
¢þ
>WENV170987369
MWVX01179363
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
434
508
+
Trp
CCA
[ENA]
¢þ
>WENV170987634
MWVX01233345
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
107
33
-
Trp
CCA
[ENA]
¢þ
>WENV170987899
MWVX01309183
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
383
454
+
Trp
CCA
[ENA]
¢þ
>WENV170988197
MWVX01405395
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
8
81
+
Trp
CCA
[ENA]
¢þ
>WENV170988430
MWVX01491215
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
237
166
-
Trp
CCA
[ENA]
¢þ
>WENV170988655
MWVX01569519
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
21
95
+
Trp
CCA
[ENA]
¢þ
>WENV170992092
MWWB01001016
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
5074
5145
+
Trp
CCA
[ENA]
¢þ
>WENV170992430
MWWB01028177
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
253
182
-
Trp
CCA
[ENA]
¢þ
>WENV170992778
MWWB01088935
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
503
430
-
Trp
CCA
[ENA]
¢þ
>WENV170993264
MWWB01241681
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
408
337
-
Trp
CCA
[ENA]
¢þ
>WENV170993321
MWWB01262794
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
147
76
-
Trp
CCA
[ENA]
¢þ
>WENV170993571
MWWB01357698
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
197
268
+
Trp
CCA
[ENA]
¢þ
>WENV170993607
MWWB01369736
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
182
255
+
Trp
CCA
[ENA]
¢þ
>WENV170993862
MWWC01020033
[MWWC] soil metagenome; MS3-5 sample; Antarctic (ecotone) soil
354
283
-
Trp
CCA
[ENA]
¢þ
>WENV170994594
MWWE01011869
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
336
407
+
Trp
CCA
[ENA]
¢þ
>WENV170994713
MWWE01033709
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
6
79
+
Trp
CCA
[ENA]
¢þ
>WENV170995297
MWWF01000199
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
5517
5444
-
Trp
CCA
[ENA]
¢þ
>WENV170995342
MWWF01001361
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
3445
3372
-
Trp
CCA
[ENA]
¢þ
>WENV170995572
MWWF01024173
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
734
661
-
Trp
CCA
[ENA]
¢þ
>WENV170995693
MWWF01039690
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
579
652
+
Trp
CCA
[ENA]
¢þ
>WENV170995740
MWWF01047429
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
240
167
-
Trp
CCA
[ENA]
¢þ
>WENV170996215
MWWF01179153
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
386
457
+
Trp
CCA
[ENA]
¢þ
>WENV170996374
MWWF01241359
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
425
354
-
Trp
CCA
[ENA]
¢þ
>WENV170996475
MWWF01288141
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
83
156
+
Trp
CCA
[ENA]
¢þ
>WENV170996479
MWWF01289329
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
348
277
-
Trp
CCA
[ENA]
¢þ
>WENV170997274
MWWG01072195
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
451
380
-
Trp
CCA
[ENA]
¢þ
>WENV170997358
MWWG01099290
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
187
260
+
Trp
CCA
[ENA]
¢þ
>WENV170997492
MWWG01154563
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
39
110
+
Trp
CCA
[ENA]
¢þ
>WENV170997533
MWWG01177821
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
191
120
-
Trp
CCA
[ENA]
¢þ
>WENV170997645
MWWG01220238
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
244
173
-
Trp
CCA
[ENA]
¢þ
>WENV170998841
MWWJ01123819
[MWWJ] soil metagenome; CN-4 sample; Antarctic (ecotone) soil
300
373
+
Trp
CCA
[ENA]
¢þ
>WENV170999183
MWWK01002542
[MWWK] soil metagenome; BG12-3 sample; Antarctic (ecotone) soil
747
820
+
Trp
CCA
[ENA]
¢þ
>WENV170999403
MWWK01047672
[MWWK] soil metagenome; BG12-3 sample; Antarctic (ecotone) soil
112
183
+
Trp
CCA
[ENA]
¢þ
>WENV170999428
MWWK01055875
[MWWK] soil metagenome; BG12-3 sample; Antarctic (ecotone) soil
453
525
+
Trp
CCA
[ENA]
¢þ
>W09108606
ABTK01000001
Bacteroidota
Chitinophaga pinensis DSM 2588 [ABTK]
2312011
2311938
-
Trp
CCA
[ENA]
¡û
>W09123571
ACHA01000059
Bacteroidota
Sphingobacterium spiritivorum ATCC 33861 [ACHA]
30139
30066
-
Trp
CCA
[ENA]
¡û
>W09123604
ACHB01000007
Bacteroidota
Sphingobacterium spiritivorum ATCC 33300 [ACHB]
94070
94143
+
Trp
CCA
[ENA]
¡û
>C181225958
LT906468
Bacteroidota
Sphingobacterium mizutaii NCTC12149 [LT906468]
834206
834277
+
Trp
CCA
-
¡û
>C191158037
CP038159
Bacteroidota
Sphingobacterium sp. CZ-2 [CP038159]
2097904
2097975
+
Trp
CCA
-
¡û
>W1910805083
MTKN01000003
Bacteroidota
[Flexibacter] sp. ATCC 35208 [MTKN]
45798
45727
-
Trp
CCA
[ENA]
¡û
>W1810069025
PEAZ01000041
Bacteroidota
Sphingobacterium sp. 1.A.4 [PEAZ]
86606
86535
-
Trp
CCA
[ENA]
¡û
>W1810364500
PVTH01000001
Bacteroidota
Arcticibacter pallidicorallinus CGMCC 1.9313 [PVTH]
49023
49094
+
Trp
CCA
[ENA]
¡û
>W1810474641
QAIL01000169
Bacteroidota
Pedobacter sp. HMWF019 [QAIL]
2029
2100
+
Trp
CCA
[ENA]
¡û
>W1810532572
QCYK01000002
Bacteroidota
Chitinophaga parva LY-1 [QCYK]
271043
271114
+
Trp
CCA
[ENA]
¡û
>W1810532598
QCYL01000001
Bacteroidota
Chitinophaga costaii A37T2 [QCYL]
788985
788914
-
Trp
CCA
[ENA]
¡û
>W1810543348
QDKG01000001
Bacteroidota
Sphingobacterium corticibacter 2c-3 [QDKG]
179797
179868
+
Trp
CCA
[ENA]
¡û
>W1810608355
QGTG01000004
Bacteroidota
Chitinophaga sp. S165 [QGTG]
163470
163541
+
Trp
CCA
[ENA]
¡û
>W1810676158
QKLU01000006
Bacteroidota
Pedobacter nutrimenti DSM 27372 [QKLU]
173833
173904
+
Trp
CCA
[ENA]
¡û
>W1810789233
QRGB01000001
Bacteroidota
Pedobacter indicus SM1810 [QRGB]
1754078
1754149
+
Trp
CCA
[ENA]
¡û
>W1810858511
QTJV01000001
Bacteroidota
Chitinophaga silvisoli K20C18050901 [QTJV]
272854
272925
+
Trp
CCA
[ENA]
¡û
>C10103729
CP001699
Bacteroidota
Chitinophaga pinensis DSM 2588 [CP001699]
2045467
2045540
+
Trp
CCA
[Ensembl]
¡û
>W1511352483
JROE01000005
Bacteroidota
Sphingobacteriaceae bacterium DW12 [JROE]
86186
86259
+
Trp
CCA
[ENA]
¡û
>C11121206
CP002584
Bacteroidota
Sphingobacterium sp. 21 [CP002584]
2967108
2967181
+
Trp
CCA
[Ensembl]
¡û
>C161090553
CP015772
Bacteroidota
Niabella ginsenosidivorans BS26 [CP015772]
3820330
3820257
-
Trp
CCA
[Ensembl]
¡û
>W121017774
AGSA01000028
Bacteroidota
Niabella soli DSM 19437 [AGSA]
205334
205261
-
Trp
CCA
[ENA]
¡û
>W1610514948
FMAR01000001
Bacteroidota
Chitinophaga costaii [FMAR]
648906
648835
-
Trp
CCA
[ENA]
¡û
>W1610617802
LGYU01000012
Bacteroidota
Chitinophagaceae bacterium PMP191F [LGYU]
24488
24417
-
Trp
CCA
[ENA]
¡û
>W1610867562
LQXS01000005
Bacteroidota
Sphingobacterium sp. CFCC 11742 [LQXS]
128321
128248
-
Trp
CCA
[ENA]
¡û
>WENV077364
AAFX01027388
Soil microbial communities from Minnesota Farm
168
243
+
Trp
CCA
[ENA]
>W1710500638
FMAR01000001
Bacteroidota
Chitinophaga costaii [FMAR]
648906
648835
-
Trp
CCA
[ENA]
¡û
>W1710512687
FMZO01000020
Bacteroidota
Niabella drilacis [FMZO]
60157
60230
+
Trp
CCA
[ENA]
¡û
>W1710515147
FNBN01000006
Bacteroidota
Chitinophaga filiformis [FNBN]
155767
155694
-
Trp
CCA
[ENA]
¡û
>W1710521464
FNGK01000003
Bacteroidota
Sphingobacterium mizutaii [FNGK]
27938
28011
+
Trp
CCA
[ENA]
¡û
>W1710538717
FNUT01000014
Bacteroidota
Sphingobacterium lactis [FNUT]
98934
98861
-
Trp
CCA
[ENA]
¡û
>W1710543712
FOAF01000013
Bacteroidota
Olivibacter domesticus domesticum [FOAF]
45235
45164
-
Trp
CCA
[ENA]
¡û
>W1710555245
FOJF01000001
Bacteroidota
Chitinophaga sp. YR573 [FOJF]
3525103
3525174
+
Trp
CCA
[ENA]
¡û
>W1710559149
FOMK01000013
Bacteroidota
Chitinophaga sp. CF118 [FOMK]
32868
32939
+
Trp
CCA
[ENA]
¡û
>W1710570074
FOUX01000002
Bacteroidota
Chitinophaga sp. YR627 [FOUX]
1363317
1363244
-
Trp
CCA
[ENA]
¡û
>W1710573635
FOXQ01000001
Bacteroidota
Parafilimonas terrae [FOXQ]
540213
540284
+
Trp
CCA
[ENA]
¡û
>W1710579997
FPIZ01000007
Bacteroidota
Chitinophaga sancti [FPIZ]
270547
270618
+
Trp
CCA
[ENA]
¡û
>W1710592512
FRCN01000004
Bacteroidota
Chitinophaga sp. CF418 [FRCN]
184316
184243
-
Trp
CCA
[ENA]
¡û
>W1710743855
LGYU01000012
Bacteroidota
Chitinophagaceae bacterium PMP191F [LGYU]
24488
24417
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK