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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.418496 (39 seq.)
>W1711297353
MADW01000027
Mycoplasmatota
Mycoplasmoides gallisepticum [MADW]
51646
51719
+
Gly
TCC
[ENA]
¡û
>W1711299084
MAFU01000010
Mycoplasmatota
Mycoplasmoides gallisepticum [MAFU]
95668
95741
+
Gly
TCC
[ENA]
¡û
>W1711299111
MAFV01000020
Mycoplasmatota
Mycoplasmoides gallisepticum [MAFV]
55449
55522
+
Gly
TCC
[ENA]
¡û
>W1711299143
MAFW01000038
Mycoplasmatota
Mycoplasmoides gallisepticum [MAFW]
51673
51746
+
Gly
TCC
[ENA]
¡û
>W1711300310
MAGQ01000010
Mycoplasmatota
Mycoplasmoides gallisepticum [MAGQ]
163523
163596
+
Gly
TCC
[ENA]
¡û
>W1711300331
MAGR01000039
Mycoplasmatota
Mycoplasmoides gallisepticum [MAGR]
93410
93483
+
Gly
TCC
[ENA]
¡û
>W131221284
AUAI01000005
Mycoplasmatota
Mycoplasmoides gallisepticum ATCC 19610 [AUAI]
42338
42411
+
Gly
TCC
[ENA]
¡û
>W1711313427
MATM01000047
Mycoplasmatota
Mycoplasmoides gallisepticum [MATM]
4918
4845
-
Gly
TCC
[ENA]
¡û
>W1711313456
MATN01000036
Mycoplasmatota
Mycoplasmoides gallisepticum [MATN]
52058
52131
+
Gly
TCC
[ENA]
¡û
>C013459
AE015450
Mycoplasmatota
Mycoplasmoides gallisepticum str. R[low] [AE015450]
248065
248138
+
Gly
TCC
[Ensembl]
¡û
>WENV182272708
OHUI01000305
[OHUI] human gut metagenome; feces
26202
26129
-
Gly
TCC
[ENA]
¢þ
>W141275857
JADI01000006
Mycoplasmatota
[Mycoplasma] imitans ATCC 51306 [JADI]
8653
8580
-
Gly
TCC
[ENA]
¡û
>WENV170258078
CEQY01034912
[CEQY] marine metagenome genome assembly TARA_070_SRF_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
282
209
-
Gly
TCC
[ENA]
¢þ
>WENV170270736
CERI01114971
[CERI] marine metagenome genome assembly TARA_067_SRF_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1383
1310
-
Gly
TCC
[ENA]
¢þ
>WENV170328600
CESV01027609
[CESV] marine metagenome genome assembly TARA_100_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2676
2749
+
Gly
TCC
[ENA]
¢þ
>WENV170402801
CEUE01567715
[CEUE] marine metagenome genome assembly TARA_133_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1510
1437
-
Gly
TCC
[ENA]
¢þ
>WENV170856331
MDTA01221807
[MDTA] marine metagenome; seawater
5623
5696
+
Gly
TCC
[ENA]
¢þ
>C191056633
CP028146
Mycoplasmatota
Mycoplasmoides gallisepticum f99 lab strain [CP028146]
240081
240154
+
Gly
TCC
-
¡û
>C191056662
CP028147
Mycoplasmatota
Mycoplasmoides gallisepticum f99 Avipro vaccine [CP028147]
240081
240154
+
Gly
TCC
-
¡û
>C191224855
LS991952
Mycoplasmatota
Mycoplasmoides gallisepticum NCTC10115 [LS991952]
246292
246365
+
Gly
TCC
-
¡û
>C141010546
CP006916
Mycoplasmatota
Mycoplasmoides gallisepticum S6 [CP006916]
251470
251543
+
Gly
TCC
[Ensembl]
¡û
>C10109394
CP001873
Mycoplasmatota
Mycoplasmoides gallisepticum str. F [CP001873]
243239
243312
+
Gly
TCC
[Ensembl]
¡û
>C10109423
CP001872
Mycoplasmatota
Mycoplasmoides gallisepticum str. R[high] [CP001872]
248013
248086
+
Gly
TCC
[Ensembl]
¡û
>W11160701
AFFR01000004
Mycoplasmatota
Mycoplasmoides gallisepticum S6 [AFFR]
386801
386874
+
Gly
TCC
[ENA]
¡û
>C121013997
CP003506
Mycoplasmatota
Mycoplasmoides gallisepticum VA94_7994-1-7P [CP003506]
266871
266944
+
Gly
TCC
[Ensembl]
¡û
>C121014025
CP003507
Mycoplasmatota
Mycoplasmoides gallisepticum NC95_13295-2-2P [CP003507]
256154
256227
+
Gly
TCC
[Ensembl]
¡û
>C121014053
CP003509
Mycoplasmatota
Mycoplasmoides gallisepticum NY01_2001.047-5-1P [CP003509]
256123
256196
+
Gly
TCC
[Ensembl]
¡û
>C121014081
CP003510
Mycoplasmatota
Mycoplasmoides gallisepticum WI01_2001.043-13-2P [CP003510]
250787
250860
+
Gly
TCC
[Ensembl]
¡û
>C121014109
CP003511
Mycoplasmatota
Mycoplasmoides gallisepticum NC06_2006.080-5-2P [CP003511]
251197
251270
+
Gly
TCC
[Ensembl]
¡û
>C131003957
CP003508
Mycoplasmatota
Mycoplasmoides gallisepticum NC96_1596-4-2P [CP003508]
256150
256223
+
Gly
TCC
[Ensembl]
¡û
>C131003985
CP003512
Mycoplasmatota
Mycoplasmoides gallisepticum CA06_2006.052-5-2P [CP003512]
250764
250837
+
Gly
TCC
[Ensembl]
¡û
>C131004013
CP003513
Mycoplasmatota
Mycoplasmoides gallisepticum NC08_2008.031-4-3P [CP003513]
251189
251262
+
Gly
TCC
[Ensembl]
¡û
>W1611052419
MAFU01000010
Mycoplasmatota
Mycoplasmoides gallisepticum [MAFU]
95668
95741
+
Gly
TCC
[ENA]
¡û
>W1611052446
MAFV01000020
Mycoplasmatota
Mycoplasmoides gallisepticum [MAFV]
55449
55522
+
Gly
TCC
[ENA]
¡û
>W1611052478
MAFW01000038
Mycoplasmatota
Mycoplasmoides gallisepticum [MAFW]
51673
51746
+
Gly
TCC
[ENA]
¡û
>W1611052594
MAGQ01000010
Mycoplasmatota
Mycoplasmoides gallisepticum [MAGQ]
163523
163596
+
Gly
TCC
[ENA]
¡û
>W1611052615
MAGR01000039
Mycoplasmatota
Mycoplasmoides gallisepticum [MAGR]
93410
93483
+
Gly
TCC
[ENA]
¡û
>W1611058480
MATM01000047
Mycoplasmatota
Mycoplasmoides gallisepticum [MATM]
4918
4845
-
Gly
TCC
[ENA]
¡û
>W1611058509
MATN01000036
Mycoplasmatota
Mycoplasmoides gallisepticum [MATN]
52058
52131
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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