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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.41861 (42 seq.)
>W1710786879
LJJD01000019
Bacillota
Alkalicoccobacillus plakortidis [LJJD]
815
903
+
Leu
TAA
[ENA]
¡û
>W1710786909
LJJD01000036
Bacillota
Alkalicoccobacillus plakortidis [LJJD]
1345
1433
+
Leu
TAA
[ENA]
¡û
>W1710909476
LNQN01000001
Bacillota
Fictibacillus enclensis [LNQN]
1336
1424
+
Leu
TAA
[ENA]
¡û
>W1711962087
NCSZ01000043
Bacillota
Gottfriedia acidiceleris acidiceler [NCSZ]
949
1037
+
Leu
TAA
[ENA]
¡û
>W131236618
AUMM01000087
Bacillota
Tuberibacillus calidus DSM 17572 [AUMM]
1433
1521
+
Leu
TAA
[ENA]
¡û
>W131236741
AUMP01000004
Bacillota
Fictibacillus gelatini DSM 15865 [AUMP]
185972
185884
-
Leu
TAA
[ENA]
¡û
>C002698
AP006627
Bacillota
Shouchella clausii KSM-K16 [AP006627]
1447971
1448056
+
Leu
TAA
[Ensembl]
¡û
>C002977
BA000004
Bacillota
Halalkalibacterium halodurans C-125 [BA000004]
1025251
1025339
+
Leu
TAA
[Ensembl]
¡û
>W141229337
BAMO01000073
Bacillota
Caldalkalibacillus mannanilyticus JCM 10596 [BAMO]
1131
1219
+
Leu
TAA
[ENA]
¡û
>W141229347
BAMO01000099
Bacillota
Caldalkalibacillus mannanilyticus JCM 10596 [BAMO]
398
310
-
Leu
TAA
[ENA]
¡û
>W141233786
BAWC01000086
Bacillota
Bacillus sp. JCM 19047 [BAWC]
200
288
+
Leu
TAA
[ENA]
¡û
>W141234915
BAWZ01000067
Bacillota
Geomicrobium sp. JCM 19037 [BAWZ]
1416
1504
+
Leu
TAA
[ENA]
¡û
>W141235169
BAXL01000033
Bacillota
Geomicrobium sp. JCM 19055 [BAXL]
37190
37102
-
Leu
TAA
[ENA]
¡û
>C191177499
CP040441
Bacillota
Halalkalibacterium halodurans [CP040441]
1033605
1033693
+
Leu
TAA
-
¡û
>W1910505809
FYEQ01000008
Bacillota
Bacillus sp. BO [FYEQ]
1649
1737
+
Leu
TAA
[ENA]
¡û
>W1910505869
FYEQ01000014
Bacillota
Bacillus sp. BO [FYEQ]
2759
2847
+
Leu
TAA
[ENA]
¡û
>W1910545463
FZLP01000015
Bacillota
Bacillus sp. Marseille-P3800 [FZLP]
550
462
-
Leu
TAA
[ENA]
¡û
>W1910940756
NJAV01000003
Bacillota
Bacillus sp. FJAT-44742 [NJAV]
5461
5549
+
Leu
TAA
[ENA]
¡û
>W1911144212
NPBN01000074
Bacillota
Shouchella clausii Feb-20 [NPBN]
86182
86097
-
Leu
TAA
[ENA]
¡û
>W1911144718
NPBX01000064
Bacillota
Shouchella clausii 7535-K [NPBX]
97049
96964
-
Leu
TAA
[ENA]
¡û
>W1911144869
NPCA01000021
Bacillota
Shouchella clausii 7537-T [NPCA]
263
348
+
Leu
TAA
[ENA]
¡û
>W1911144935
NPCB01000048
Bacillota
Shouchella clausii 7538 [NPCB]
96974
96889
-
Leu
TAA
[ENA]
¡û
>W1911145022
NPCC01000022
Bacillota
Shouchella clausii 7539 [NPCC]
787
872
+
Leu
TAA
[ENA]
¡û
>W1911146498
NPDF01000059
Bacillota
Shouchella clausii Jan-94 [NPDF]
27175
27090
-
Leu
TAA
[ENA]
¡û
>W1911149888
NPGD01000044
Bacillota
Bacillus sp. 7520-S [NPGD]
3154
3069
-
Leu
TAA
[ENA]
¡û
>W1911159620
NPMP01000026
Bacillota
Shouchella clausii 7522 [NPMP]
167
252
+
Leu
TAA
[ENA]
¡û
>W1911321541
NUGT01000038
Bacillota
Bacillus sp. AFS055030 [NUGT]
16893
16808
-
Leu
TAA
[ENA]
¡û
>W1911321559
NUGT01000065
Bacillota
Bacillus sp. AFS055030 [NUGT]
2986
2901
-
Leu
TAA
[ENA]
¡û
>W1810759212
QPJG01000003
Bacillota
Bacillus sp. NFR08 [QPJG]
1646
1731
+
Leu
TAA
[ENA]
¡û
>C151004973
CP003923
Bacillota
Shouchella lehensis G1 [CP003923]
1218810
1218898
+
Leu
TAA
[Ensembl]
¡û
>C161042878
CP012600
Bacillota
Bacillus gobiensis FJAT-4402 [CP012600]
327563
327651
+
Leu
TAA
[Ensembl]
¡û
>W1610042316
BAXQ01000014
Bacillota
Thalassobacillus sp. C254 [BAXQ]
1929
2017
+
Leu
TAA
[ENA]
¡û
>W1610042447
BAXS01000009
Bacillota
Bacillus sp. JCM 19059 [BAXS]
145390
145302
-
Leu
TAA
[ENA]
¡û
>W1610042464
BAXS01000031
Bacillota
Bacillus sp. JCM 19059 [BAXS]
390
302
-
Leu
TAA
[ENA]
¡û
>W1610650734
LJJD01000019
Bacillota
Alkalicoccobacillus plakortidis [LJJD]
815
903
+
Leu
TAA
[ENA]
¡û
>W1610650764
LJJD01000036
Bacillota
Alkalicoccobacillus plakortidis [LJJD]
1345
1433
+
Leu
TAA
[ENA]
¡û
>W1610767835
LNQN01000001
Bacillota
Fictibacillus enclensis [LNQN]
1336
1424
+
Leu
TAA
[ENA]
¡û
>W1710039410
BAXQ01000014
Bacillota
Thalassobacillus sp. C254 [BAXQ]
1929
2017
+
Leu
TAA
[ENA]
¡û
>W1710039541
BAXS01000009
Bacillota
Bacillus sp. JCM 19059 [BAXS]
145390
145302
-
Leu
TAA
[ENA]
¡û
>W1710039558
BAXS01000031
Bacillota
Bacillus sp. JCM 19059 [BAXS]
390
302
-
Leu
TAA
[ENA]
¡û
>W1710523348
FNHW01000003
Bacillota
Fictibacillus solisalsi [FNHW]
1601
1689
+
Leu
TAA
[ENA]
¡û
>W1710591423
FRBS01000001
Bacillota
Shouchella rhizosphaerae [FRBS]
2420
2505
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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