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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.418713 (29 seq.)
>W1711658861
MQNP01000106
Gammaproteobacteria
Stenotrophomonas sp. KAs 5-3 [MQNP]
877
804
-
Gly
TCC
[ENA]
¡û
>W1711716752
MTGD01000040
Gammaproteobacteria
Stenotrophomonas maltophilia [MTGD]
29795
29868
+
Gly
TCC
[ENA]
¡û
>C171063367
CP017480
Gammaproteobacteria
Luteibacter rhizovicinus DSM 16549 LJ96 [CP017480]
2664255
2664328
+
Gly
TCC
-
¡û
>WENV180014544
FQKF010041108
[FQKF] soil metagenome; Soil
152
79
-
Gly
TCC
[ENA]
¢þ
>WENV182555324
OJDA01000020
[OJDA] seawater metagenome; Sea water
12557
12630
+
Gly
TCC
[ENA]
¢þ
>WENV182572872
OJFN01001973
[OJFN] seawater metagenome; Sea water
220
293
+
Gly
TCC
[ENA]
¢þ
>WENV182579034
OJGS01000040
[OJGS] seawater metagenome; Sea water
50060
49987
-
Gly
TCC
[ENA]
¢þ
>W141284456
JALV01000053
Gammaproteobacteria
Stenotrophomonas maltophilia MTCC 434 [JALV]
38674
38601
-
Gly
TCC
[ENA]
¡û
>C181226651
LT906480
Gammaproteobacteria
Stenotrophomonas maltophilia NCTC10257 [LT906480]
896972
897045
+
Gly
TCC
-
¡û
>C191078898
CP031704
Gammaproteobacteria
Solimonas sp. K1W22B-7 [CP031704]
4443958
4443885
-
Gly
TCC
-
¡û
>C191186002
CP041046
Gammaproteobacteria
Luteibacter pinisoli MAH-14 [CP041046]
1101849
1101922
+
Gly
TCC
-
¡û
>W141820691
JQNB01000001
Gammaproteobacteria
Luteibacter sp. 9135 [JQNB]
2049610
2049683
+
Gly
TCC
[ENA]
¡û
>W141820813
JQND01000001
Gammaproteobacteria
Luteibacter sp. 9145 [JQND]
3557298
3557225
-
Gly
TCC
[ENA]
¡û
>W141821255
JQNL01000001
Gammaproteobacteria
Luteibacter sp. 9143a 9143 [JQNL]
3369583
3369656
+
Gly
TCC
[ENA]
¡û
>W1810273217
PSNW01000005
Gammaproteobacteria
Solimonas fluminis HR-BB [PSNW]
452
379
-
Gly
TCC
[ENA]
¡û
>W1810477562
QAOX01000003
Gammaproteobacteria
Luteibacter sp. OK325 [QAOX]
87593
87520
-
Gly
TCC
[ENA]
¡û
>W1511433889
JUHO01000001
Gammaproteobacteria
Luteibacter sp. 9133 [JUHO]
981310
981383
+
Gly
TCC
[ENA]
¡û
>W1511504878
JXIP01000128
Gammaproteobacteria
Stenotrophomonas maltophilia ZBG7B [JXIP]
328
255
-
Gly
TCC
[ENA]
¡û
>W1511547577
JZRB01000020
Gammaproteobacteria
Luteibacter yeojuensis SU11 [JZRB]
18357
18284
-
Gly
TCC
[ENA]
¡û
>C161018623
CP008838
Gammaproteobacteria
Stenotrophomonas maltophilia 13637 [CP008838]
843362
843435
+
Gly
TCC
[Ensembl]
¡û
>W1610071812
BCUI01000067
Gammaproteobacteria
Stenotrophomonas maltophilia NBRC 14161 [BCUI]
29741
29814
+
Gly
TCC
[ENA]
¡û
>W1610587027
LDJK01000090
Gammaproteobacteria
Stenotrophomonas chelatiphaga [LDJK]
1904
1977
+
Gly
TCC
[ENA]
¡û
>W1710069014
BCUI01000067
Gammaproteobacteria
Stenotrophomonas maltophilia NBRC 14161 [BCUI]
29741
29814
+
Gly
TCC
[ENA]
¡û
>W1710515281
FNBR01000003
Gammaproteobacteria
Dyella sp. 333MFSha [FNBR]
427
354
-
Gly
TCC
[ENA]
¡û
>W1710548725
FODZ01000008
Gammaproteobacteria
Luteibacter sp. UNC138MFCol5.1 [FODZ]
1216
1143
-
Gly
TCC
[ENA]
¡û
>W1710555199
FOJE01000001
Gammaproteobacteria
Luteibacter sp. 329MFSha [FOJE]
2177063
2176990
-
Gly
TCC
[ENA]
¡û
>W1710579673
FPIS01000002
Gammaproteobacteria
Luteibacter sp. UNCMF366Tsu5.1 [FPIS]
559083
559156
+
Gly
TCC
[ENA]
¡û
>W1710603073
FUYT01000014
Gammaproteobacteria
Luteibacter sp. 22Crub2.1 [FUYT]
165731
165804
+
Gly
TCC
[ENA]
¡û
>W1710706157
LDJK01000090
Gammaproteobacteria
Stenotrophomonas chelatiphaga [LDJK]
1904
1977
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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