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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.419226 (108 seq.)
>W1711422972
MICC01000073
Campylobacterota
Sulfurimonas sp. RIFOXYB12_FULL_35_9 [MICC]
3364
3290
-
Asn
GTT
[ENA]
¡û
>W1711422995
MICD01000648
Campylobacterota
Sulfurimonas sp. RIFOXYB2_FULL_37_5 [MICD]
547
621
+
Asn
GTT
[ENA]
¡û
>W1711423011
MICF01000002
Campylobacterota
Sulfurimonas sp. RIFOXYD12_FULL_33_39 [MICF]
63437
63511
+
Asn
GTT
[ENA]
¡û
>W1711423036
MICF01000009
Campylobacterota
Sulfurimonas sp. RIFOXYD12_FULL_33_39 [MICF]
30586
30512
-
Asn
GTT
[ENA]
¡û
>W1711423050
MICG01000331
Campylobacterota
Sulfurimonas sp. RIFOXYD12_FULL_36_11 [MICG]
3533
3459
-
Asn
GTT
[ENA]
¡û
>W1711423084
MICH01000013
Campylobacterota
Sulfurimonas sp. RIFOXYD2_FULL_34_21 [MICH]
63439
63513
+
Asn
GTT
[ENA]
¡û
>W1711423113
MICI01000234
Campylobacterota
Sulfurimonas sp. RIFOXYD2_FULL_37_8 [MICI]
3342
3268
-
Asn
GTT
[ENA]
¡û
>C025437
CP000153
Campylobacterota
Sulfurimonas denitrificans DSM 1251 [CP000153]
643990
644064
+
Asn
GTT
[Ensembl]
¡û
>C025459
CP000153
Campylobacterota
Sulfurimonas denitrificans DSM 1251 [CP000153]
644388
644314
-
Asn
GTT
[Ensembl]
¡û
>WENV180345840
OBLN01007430
[OBLN] sediment metagenome; sediment
995
921
-
Asn
GTT
[ENA]
¢þ
>WENV181207927
OFBA01003712
[OFBA] metagenome; hydrothermal vent
524
450
-
Asn
GTT
[ENA]
¢þ
>WENV181209134
OFBD01007771
[OFBD] metagenome; hydrothermal vent
384
310
-
Asn
GTT
[ENA]
¢þ
>WENV181216249
OFCB01011703
[OFCB] metagenome; hydrothermal vent
77
151
+
Asn
GTT
[ENA]
¢þ
>WENV181223967
OFDD01005206
[OFDD] metagenome; hydrothermal vent
458
532
+
Asn
GTT
[ENA]
¢þ
>WENV181293999
OFHG01054965
[OFHG] soil metagenome; Clay
505
579
+
Asn
GTT
[ENA]
¢þ
>WENV183515256
OMKS01053884
[OMKS] sediment metagenome; hot spring sediment
294
368
+
Asn
GTT
[ENA]
¢þ
>WENV183515370
OMKS01059596
[OMKS] sediment metagenome; hot spring sediment
5
77
+
Asn
GTT
[ENA]
¢þ
>WENV183515727
OMKS01088022
[OMKS] sediment metagenome; hot spring sediment
2
76
+
Asn
GTT
[ENA]
¢þ
>WENV183681993
ORMF010384790
[ORMF] groundwater metagenome; groundwater
61511
61437
-
Asn
GTT
[ENA]
¢þ
>WENV183704530
PDWI01000338
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
25
99
+
Asn
GTT
[ENA]
¢þ
>WENV183705103
PDWI01001041
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
25234
25308
+
Asn
GTT
[ENA]
¢þ
>WENV183705760
PDWI01002219
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
8888
8962
+
Asn
GTT
[ENA]
¢þ
>WENV183708306
PDWI01014579
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
3845
3771
-
Asn
GTT
[ENA]
¢þ
>WENV183709149
PDWI01024618
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
3298
3224
-
Asn
GTT
[ENA]
¢þ
>WENV183711270
PDWI01064874
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
25
99
+
Asn
GTT
[ENA]
¢þ
>WENV183712767
PDWI01113104
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1101
1175
+
Asn
GTT
[ENA]
¢þ
>WENV170005892
AMQJ01003462
[AMQJ] sediment metagenome; subsurface aquifer sediment
1792
1718
-
Asn
GTT
[ENA]
¢þ
>WENV170005909
AMQJ01004179
[AMQJ] sediment metagenome; subsurface aquifer sediment
110
36
-
Asn
GTT
[ENA]
¢þ
>WENV170012766
ASRO01000236
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
2763
2689
-
Asn
GTT
[ENA]
¢þ
>WENV170012851
ASRP01001525
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
2081
2155
+
Asn
GTT
[ENA]
¢þ
>WENV170012946
ASRQ01000145
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
2105
2179
+
Asn
GTT
[ENA]
¢þ
>WENV170014496
AYRG01003268
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
8
82
+
Asn
GTT
[ENA]
¢þ
>WENV170571150
FLOH01000080
[FLOH] marine metagenome; water
261399
261473
+
Asn
GTT
[ENA]
¢þ
>WENV170571153
FLOH01000080
[FLOH] marine metagenome; water
226894
226820
-
Asn
GTT
[ENA]
¢þ
>WENV170571331
FLOH01000135
[FLOH] marine metagenome; water
135424
135498
+
Asn
GTT
[ENA]
¢þ
>WENV170571335
FLOH01000135
[FLOH] marine metagenome; water
141810
141884
+
Asn
GTT
[ENA]
¢þ
>WENV170571617
FLOH01000230
[FLOH] marine metagenome; water
91640
91566
-
Asn
GTT
[ENA]
¢þ
>WENV170575808
FPHP01000041
[FPHP] hydrothermal vent metagenome genome assembly, contig: NODE_32.; water
986
912
-
Asn
GTT
[ENA]
¢þ
>WENV170575809
FPHP01000044
[FPHP] hydrothermal vent metagenome genome assembly, contig: NODE_32.; water
74851
74777
-
Asn
GTT
[ENA]
¢þ
>WENV170598545
FUWD010039456
[FUWD] metagenome; unknown
206
280
+
Asn
GTT
[ENA]
¢þ
>WENV170598570
FUWD010040076
[FUWD] metagenome; unknown
585
511
-
Asn
GTT
[ENA]
¢þ
>WENV170609202
FUWD011319434
[FUWD] metagenome; unknown
188
114
-
Asn
GTT
[ENA]
¢þ
>WENV170614682
FUWD012839481
[FUWD] metagenome; unknown
2089
2163
+
Asn
GTT
[ENA]
¢þ
>WENV170615292
FUWD012853583
[FUWD] metagenome; unknown
9871
9945
+
Asn
GTT
[ENA]
¢þ
>WENV170615293
FUWD012853584
[FUWD] metagenome; unknown
39
113
+
Asn
GTT
[ENA]
¢þ
>WENV170621744
FUWD013071021
[FUWD] metagenome; unknown
1315
1389
+
Asn
GTT
[ENA]
¢þ
>WENV170629931
FUWD013286711
[FUWD] metagenome; unknown
1315
1389
+
Asn
GTT
[ENA]
¢þ
>WENV170646423
JQGR01003103
[JQGR] bioreactor metagenome; continuous culture inoculated with microbial biomass from the upper 2 cm of a marine
307
233
-
Asn
GTT
[ENA]
¢þ
>WENV170657544
JTFP01000893
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
18
92
+
Asn
GTT
[ENA]
¢þ
>WENV170658407
JTFP01105228
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
85
11
-
Asn
GTT
[ENA]
¢þ
>WENV170693129
LGOV01094908
[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge
1789
1715
-
Asn
GTT
[ENA]
¢þ
>C181197002
CP031218
Campylobacterota
Malaciobacter halophilus CCUG 53805 [CP031218]
1906097
1906023
-
Asn
GTT
-
¡û
>C181197003
CP031218
Campylobacterota
Malaciobacter halophilus CCUG 53805 [CP031218]
1905991
1905917
-
Asn
GTT
-
¡û
>C181197004
CP031218
Campylobacterota
Malaciobacter halophilus CCUG 53805 [CP031218]
1905890
1905816
-
Asn
GTT
-
¡û
>C191084500
CP032098
Campylobacterota
Malaciobacter molluscorum LMG 25693 CECT 7696 [CP032098]
1923053
1922979
-
Asn
GTT
-
¡û
>C191084501
CP032098
Campylobacterota
Malaciobacter molluscorum LMG 25693 CECT 7696 [CP032098]
1922961
1922887
-
Asn
GTT
-
¡û
>C191084502
CP032098
Campylobacterota
Malaciobacter molluscorum LMG 25693 CECT 7696 [CP032098]
1922870
1922796
-
Asn
GTT
-
¡û
>C191084667
CP032101
Campylobacterota
Malaciobacter marinus JCM 15502 [CP032101]
1940758
1940684
-
Asn
GTT
-
¡û
>C191084668
CP032101
Campylobacterota
Malaciobacter marinus JCM 15502 [CP032101]
1940652
1940578
-
Asn
GTT
-
¡û
>C191084669
CP032101
Campylobacterota
Malaciobacter marinus JCM 15502 [CP032101]
1940552
1940478
-
Asn
GTT
-
¡û
>W09103217
AAJA01000001
Campylobacterota
Sulfurimonas denitrificans ATCC 33889 [AAJA]
2201227
2201301
+
Asn
GTT
[ENA]
¡û
>W1910744433
MIBO01000388
Campylobacterota
Sulfuricurvum sp. RIFCSPHIGHO2_02_FULL_43_9 [MIBO]
1087
1013
-
Asn
GTT
[ENA]
¡û
>W1910744560
MIBX01000086
Campylobacterota
Sulfurimonas sp. RIFCSPHIGHO2_12_FULL_36_9 [MIBX]
100
26
-
Asn
GTT
[ENA]
¡û
>W1910744595
MIBY01000120
Campylobacterota
Sulfurimonas sp. RIFCSPLOWO2_02_FULL_36_28 [MIBY]
12050
11976
-
Asn
GTT
[ENA]
¡û
>W1910744602
MIBZ01000023
Campylobacterota
Sulfurimonas sp. RIFCSPLOWO2_12_36_12 [MIBZ]
1771
1697
-
Asn
GTT
[ENA]
¡û
>W1910744618
MIBZ01000038
Campylobacterota
Sulfurimonas sp. RIFCSPLOWO2_12_36_12 [MIBZ]
93
19
-
Asn
GTT
[ENA]
¡û
>W1910744656
MICA01000321
Campylobacterota
Sulfurimonas sp. RIFCSPLOWO2_12_FULL_34_6 [MICA]
3298
3372
+
Asn
GTT
[ENA]
¡û
>W1911413057
NWVW01000007
Campylobacterota
Malaciobacter canalis F138-33 [NWVW]
39949
39875
-
Asn
GTT
[ENA]
¡û
>W1911413058
NWVW01000007
Campylobacterota
Malaciobacter canalis F138-33 [NWVW]
39843
39769
-
Asn
GTT
[ENA]
¡û
>W1911413059
NWVW01000007
Campylobacterota
Malaciobacter canalis F138-33 [NWVW]
39743
39669
-
Asn
GTT
[ENA]
¡û
>W1911413118
NWVX01000019
Campylobacterota
Malaciobacter marinus F140-37 [NWVX]
16267
16341
+
Asn
GTT
[ENA]
¡û
>W1911413119
NWVX01000019
Campylobacterota
Malaciobacter marinus F140-37 [NWVX]
16373
16447
+
Asn
GTT
[ENA]
¡û
>W1911413120
NWVX01000019
Campylobacterota
Malaciobacter marinus F140-37 [NWVX]
16473
16547
+
Asn
GTT
[ENA]
¡û
>W1911419395
NXAO01000063
Campylobacterota
Malaciobacter marinus CECT 7727 [NXAO]
21461
21535
+
Asn
GTT
[ENA]
¡û
>W1911419396
NXAO01000063
Campylobacterota
Malaciobacter marinus CECT 7727 [NXAO]
21567
21641
+
Asn
GTT
[ENA]
¡û
>W1911419397
NXAO01000063
Campylobacterota
Malaciobacter marinus CECT 7727 [NXAO]
21667
21741
+
Asn
GTT
[ENA]
¡û
>W1911424163
NXFY01000004
Campylobacterota
Malaciobacter molluscorum CECT 7696 F98-3 [NXFY]
70219
70145
-
Asn
GTT
[ENA]
¡û
>W1911424164
NXFY01000004
Campylobacterota
Malaciobacter molluscorum CECT 7696 F98-3 [NXFY]
70127
70053
-
Asn
GTT
[ENA]
¡û
>W1911424165
NXFY01000004
Campylobacterota
Malaciobacter molluscorum CECT 7696 F98-3 [NXFY]
70036
69962
-
Asn
GTT
[ENA]
¡û
>W1911426198
NXID01000035
Campylobacterota
Malaciobacter mytili LMG 24559 CECT 7386 [NXID]
29475
29401
-
Asn
GTT
[ENA]
¡û
>W1911426199
NXID01000035
Campylobacterota
Malaciobacter mytili LMG 24559 CECT 7386 [NXID]
29370
29296
-
Asn
GTT
[ENA]
¡û
>W1911426200
NXID01000035
Campylobacterota
Malaciobacter mytili LMG 24559 CECT 7386 [NXID]
29272
29198
-
Asn
GTT
[ENA]
¡û
>W1911426262
NXIF01000013
Campylobacterota
Malaciobacter halophilus DSM 18005 [NXIF]
33891
33817
-
Asn
GTT
[ENA]
¡û
>W1911426263
NXIF01000013
Campylobacterota
Malaciobacter halophilus DSM 18005 [NXIF]
33785
33711
-
Asn
GTT
[ENA]
¡û
>W1911426264
NXIF01000013
Campylobacterota
Malaciobacter halophilus DSM 18005 [NXIF]
33684
33610
-
Asn
GTT
[ENA]
¡û
>W1911576241
PDJW01000007
Campylobacterota
Malaciobacter mytili T234 [PDJW]
9875
9949
+
Asn
GTT
[ENA]
¡û
>W1911576242
PDJW01000007
Campylobacterota
Malaciobacter mytili T234 [PDJW]
9980
10054
+
Asn
GTT
[ENA]
¡û
>W1911576243
PDJW01000007
Campylobacterota
Malaciobacter mytili T234 [PDJW]
10078
10152
+
Asn
GTT
[ENA]
¡û
>W1911576282
PDJX01000003
Campylobacterota
Malaciobacter molluscorum F91 [PDJX]
110314
110240
-
Asn
GTT
[ENA]
¡û
>W1911576283
PDJX01000003
Campylobacterota
Malaciobacter molluscorum F91 [PDJX]
110222
110148
-
Asn
GTT
[ENA]
¡û
>W1911576284
PDJX01000003
Campylobacterota
Malaciobacter molluscorum F91 [PDJX]
110131
110057
-
Asn
GTT
[ENA]
¡û
>W1911576337
PDJY01000001
Campylobacterota
Malaciobacter halophilus F166-45 [PDJY]
33826
33752
-
Asn
GTT
[ENA]
¡û
>W1911576338
PDJY01000001
Campylobacterota
Malaciobacter halophilus F166-45 [PDJY]
33720
33646
-
Asn
GTT
[ENA]
¡û
>W1911576339
PDJY01000001
Campylobacterota
Malaciobacter halophilus F166-45 [PDJY]
33620
33546
-
Asn
GTT
[ENA]
¡û
>W1911576488
PDKC01000008
Campylobacterota
Arcobacter sp. CECT 8985 [PDKC]
83540
83614
+
Asn
GTT
[ENA]
¡û
>W1911576489
PDKC01000008
Campylobacterota
Arcobacter sp. CECT 8985 [PDKC]
83639
83713
+
Asn
GTT
[ENA]
¡û
>W1911576648
PDKG01000001
Campylobacterota
Arcobacter sp. CECT 8986 [PDKG]
447094
447020
-
Asn
GTT
[ENA]
¡û
>W1911576649
PDKG01000001
Campylobacterota
Arcobacter sp. CECT 8986 [PDKG]
447002
446928
-
Asn
GTT
[ENA]
¡û
>W1911576650
PDKG01000001
Campylobacterota
Arcobacter sp. CECT 8986 [PDKG]
446912
446838
-
Asn
GTT
[ENA]
¡û
>W1810295934
PTIW01000038
Campylobacterota
Malaciobacter marinus MARC-MIP3H16 [PTIW]
4217
4143
-
Asn
GTT
[ENA]
¡û
>W1810295935
PTIW01000038
Campylobacterota
Malaciobacter marinus MARC-MIP3H16 [PTIW]
4111
4037
-
Asn
GTT
[ENA]
¡û
>W1810295936
PTIW01000038
Campylobacterota
Malaciobacter marinus MARC-MIP3H16 [PTIW]
4011
3937
-
Asn
GTT
[ENA]
¡û
>C11119326
CP002205
Campylobacterota
Sulfurimonas autotrophica DSM 16294 [CP002205]
636187
636261
+
Asn
GTT
[Ensembl]
¡û
>C11119327
CP002205
Campylobacterota
Sulfurimonas autotrophica DSM 16294 [CP002205]
636287
636361
+
Asn
GTT
[Ensembl]
¡û
>WENV069781
AACY023782806
Marine microbial communities from Global Ocean Sampling (GOS)
320
244
-
Asn
GTT
[ENA]
>W1710602847
FUYO01000034
Campylobacterota
Malaciobacter marinus [FUYO]
10330
10256
-
Asn
GTT
[ENA]
¡û
>W1710602848
FUYO01000034
Campylobacterota
Malaciobacter marinus [FUYO]
10224
10150
-
Asn
GTT
[ENA]
¡û
>W1710602849
FUYO01000034
Campylobacterota
Malaciobacter marinus [FUYO]
10124
10050
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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