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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.419491 (55 seq.)
>W131161345
AQXP01000043
Gammaproteobacteria
Thioalkalivibrio sp. ALJ11 [AQXP]
247
174
-
Gln
CTG
[ENA]
¡û
>W131161696
AQXY01000011
Gammaproteobacteria
Thioalkalivibrio sp. ALE14 [AQXY]
27264
27337
+
Gln
CTG
[ENA]
¡û
>W131161959
AQYE01000008
Gammaproteobacteria
Thioalkalivibrio sp. ALJ9 [AQYE]
223673
223746
+
Gln
CTG
[ENA]
¡û
>W131163160
AQZO01000005
Gammaproteobacteria
Thioalkalivibrio thiocyanodenitrificans ARhD 1 [AQZO]
2571947
2572020
+
Gln
CTG
[ENA]
¡û
>W131173717
ARHW01000013
Gammaproteobacteria
Thioalkalivibrio sp. ALJ3 [ARHW]
91961
91888
-
Gln
CTG
[ENA]
¡û
>W131173793
ARHY01000009
Gammaproteobacteria
Thioalkalivibrio sp. ALJ5 [ARHY]
383919
383846
-
Gln
CTG
[ENA]
¡û
>W131173825
ARHZ01000008
Gammaproteobacteria
Thioalkalivibrio sp. ARh3 [ARHZ]
66755
66828
+
Gln
CTG
[ENA]
¡û
>W131173883
ARIA01000014
Gammaproteobacteria
Thioalkalivibrio sp. ALE25 [ARIA]
75446
75519
+
Gln
CTG
[ENA]
¡û
>W131173975
ARIC01000059
Gammaproteobacteria
Thioalkalivibrio sp. ALgr3 [ARIC]
186081
186008
-
Gln
CTG
[ENA]
¡û
>W131174265
ARIJ01000009
Gammaproteobacteria
Thioalkalivibrio sp. ALE30 [ARIJ]
11539
11612
+
Gln
CTG
[ENA]
¡û
>W131176363
ARJZ01000009
Gammaproteobacteria
Thioalkalivibrio sp. ALgr1 [ARJZ]
591426
591353
-
Gln
CTG
[ENA]
¡û
>W131176463
ARKB01000014
Gammaproteobacteria
Thioalkalivibrio sp. ALJ2 [ARKB]
771863
771936
+
Gln
CTG
[ENA]
¡û
>W131177175
ARKP01000002
Gammaproteobacteria
Thioalkalivibrio sp. ALJ21 [ARKP]
88345
88272
-
Gln
CTG
[ENA]
¡û
>W131178295
ARLL01000059
Gammaproteobacteria
Thioalkalivibrio sp. ALE11 [ARLL]
207980
207907
-
Gln
CTG
[ENA]
¡û
>W131178357
ARLN01000005
Gammaproteobacteria
Thioalkalivibrio sp. ALD1 [ARLN]
117498
117571
+
Gln
CTG
[ENA]
¡û
>W131178513
ARLQ01000032
Gammaproteobacteria
Thioalkalivibrio sp. ALE16 [ARLQ]
49369
49442
+
Gln
CTG
[ENA]
¡û
>W131178755
ARLU01000034
Gammaproteobacteria
Thioalkalivibrio sp. ALE20 [ARLU]
467384
467311
-
Gln
CTG
[ENA]
¡û
>W131178884
ARLX01000025
Gammaproteobacteria
Thioalkalivibrio sp. ALE18 [ARLX]
208636
208709
+
Gln
CTG
[ENA]
¡û
>W131178914
ARLY01000015
Gammaproteobacteria
Thioalkalivibrio sp. ALgr5 [ARLY]
41398
41325
-
Gln
CTG
[ENA]
¡û
>W131179703
ARMP01000023
Gammaproteobacteria
Thioalkalivibrio sp. ALJT [ARMP]
322184
322111
-
Gln
CTG
[ENA]
¡û
>W131185584
ARTU01000011
Gammaproteobacteria
Thioalkalivibrio sp. ALJ15 [ARTU]
531373
531300
-
Gln
CTG
[ENA]
¡û
>W1711256737
LYSX01000003
Gammaproteobacteria
Ectothiorhodospiraceae bacterium BBD 1991-15 [LYSX]
1617093
1617020
-
Gln
CTG
[ENA]
¡û
>W1711256801
LYSX01000018
Gammaproteobacteria
Ectothiorhodospiraceae bacterium BBD 1991-15 [LYSX]
25503
25430
-
Gln
CTG
[ENA]
¡û
>W131214702
ATUK01000012
Gammaproteobacteria
Thioalkalivibrio sp. AKL19 [ATUK]
304044
303971
-
Gln
CTG
[ENA]
¡û
>C000601
CP000453
Gammaproteobacteria
Alkalilimnicola ehrlichii MLHE-1 [CP000453]
2543801
2543728
-
Gln
CTG
[Ensembl]
¡û
>WENV180297277
OBJA01019334
[OBJA] soil metagenome; sediment, water from around vicinity
210
137
-
Gln
CTG
[ENA]
¢þ
>WENV181162533
OEIO01000331
[OEIO] marine metagenome; sea ice
484
411
-
Gln
CTG
[ENA]
¢þ
>WENV181295121
OFHI01000581
[OFHI] soil metagenome; Clay
3978
3905
-
Gln
CTG
[ENA]
¢þ
>WENV181321596
OFKM01020600
[OFKM] marine metagenome; sea ice
262
189
-
Gln
CTG
[ENA]
¢þ
>WENV181323596
OFKY01012467
[OFKY] marine metagenome; sea ice
296
223
-
Gln
CTG
[ENA]
¢þ
>C08000374
CP000453
Gammaproteobacteria
Alkalilimnicola ehrlichii MLHE-1 [CP000453]
2543801
2543731
-
Gln
CTG
[Ensembl]
¡û
>WENV183623602
OOGA01016625
[OOGA] marine metagenome; sea ice
203
130
-
Gln
CTG
[ENA]
¢þ
>WENV183628408
OOGN01037605
[OOGN] marine metagenome; sea ice
209
136
-
Gln
CTG
[ENA]
¢þ
>WENV183630715
OOGU01000845
[OOGU] marine metagenome; sea ice
3426
3499
+
Gln
CTG
[ENA]
¢þ
>WENV170471468
CEVG01072578
[CEVG] marine metagenome genome assembly TARA_140_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
307
380
+
Gln
CTG
[ENA]
¢þ
>WENV170475914
CEVI01049814
[CEVI] marine metagenome genome assembly TARA_142_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
342
269
-
Gln
CTG
[ENA]
¢þ
>WENV170534729
CEWO01364246
[CEWO] marine metagenome genome assembly TARA_145_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
991
918
-
Gln
CTG
[ENA]
¢þ
>WENV170535933
CEWP01126276
[CEWP] marine metagenome genome assembly TARA_067_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
475
402
-
Gln
CTG
[ENA]
¢þ
>WENV170805400
MDSW01064230
[MDSW] marine metagenome; seawater
3325
3398
+
Gln
CTG
[ENA]
¢þ
>WENV170813639
MDSW01203889
[MDSW] marine metagenome; seawater
14715
14642
-
Gln
CTG
[ENA]
¢þ
>WENV170880771
MDTC01119983
[MDTC] marine metagenome; seawater
1380
1453
+
Gln
CTG
[ENA]
¢þ
>W09104173
AALK01000011
Gammaproteobacteria
Alkalilimnicola ehrlichii MLHE-1 [AALK]
54782
54709
-
Gln
CTG
[ENA]
¡û
>W09125858
ACIU01000002
Gammaproteobacteria
Thioalkalivibrio sp. K90mix [ACIU] K90mix [ACIU]
335597
335524
-
Gln
CTG
[ENA]
¡û
>W1910896616
NFZV01000001
Gammaproteobacteria
Alkalilimnicola ehrlichii AK92 [NFZV]
189928
190001
+
Gln
CTG
[ENA]
¡û
>W1810579276
QEQK01000001
Gammaproteobacteria
Abyssibacter profundi OUC007 [QEQK]
263026
262953
-
Gln
CTG
[ENA]
¡û
>C151016157
CP007029
Gammaproteobacteria
Thioalkalivibrio paradoxus ARh 1 [CP007029]
824332
824405
+
Gln
CTG
[Ensembl]
¡û
>C10113282
CP001905
Gammaproteobacteria
Thioalkalivibrio sp. K90mix [CP001905]
574049
574122
+
Gln
CTG
[Ensembl]
¡û
>W11178571
AGFB01000001
Gammaproteobacteria
Thioalkalivibrio thiocyanoxidans ARh 4 [AGFB]
60884
60811
-
Gln
CTG
[ENA]
¡û
>C161005748
CP007268
Gammaproteobacteria
Ectothiorhodospira haloalkaliphila A [CP007268]
333816
333889
+
Gln
CTG
-
¡û
>WENV056547
AACY023259139
Marine microbial communities from Global Ocean Sampling (GOS)
1081
1154
+
Gln
CTG
[ENA]
>C131010936
CP003989
Gammaproteobacteria
Thioalkalivibrio nitratireducens DSM 14787 [CP003989]
3301851
3301778
-
Gln
CTG
[Ensembl]
¡û
>W1611019762
LYSX01000003
Gammaproteobacteria
Ectothiorhodospiraceae bacterium BBD 1991-15 [LYSX]
1617093
1617020
-
Gln
CTG
[ENA]
¡û
>W1611019826
LYSX01000018
Gammaproteobacteria
Ectothiorhodospiraceae bacterium BBD 1991-15 [LYSX]
25503
25430
-
Gln
CTG
[ENA]
¡û
>W1710549088
FOEG01000004
Gammaproteobacteria
Aquisalimonas asiatica [FOEG]
345703
345776
+
Gln
CTG
[ENA]
¡û
>W1710550770
FOFO01000002
Gammaproteobacteria
Ectothiorhodospira magna [FOFO]
42199
42126
-
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK