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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.419750 (33 seq.)
>W1711272475
LZFJ01000001
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
437842
437768
-
Gly
CCC
[ENA]
¡û
>C171019747
CP013074
Chloroflexota
Dehalococcoides mccartyi CG3 [CP013074]
832110
832184
+
Gly
CCC
-
¡û
>C171100349
CP019865
Chloroflexota
Dehalococcoides mccartyi KBTCE2 [CP019865]
711280
711354
+
Gly
CCC
-
¡û
>C171100394
CP019866
Chloroflexota
Dehalococcoides mccartyi KBTCE3 [CP019866]
668958
669032
+
Gly
CCC
-
¡û
>C171101973
CP019969
Chloroflexota
Dehalococcoides mccartyi KBVC2 [CP019969]
652766
652840
+
Gly
CCC
-
¡û
>C007686
CP000027
Chloroflexota
Dehalococcoides mccartyi 195 [CP000027]
781966
782040
+
Gly
CCC
[Ensembl]
¡û
>W08002839
ABFQ01000001
Chloroflexota
Dehalococcoides mccartyi VS [ABFQ]
85549
85478
-
Gly
CCC
[ENA]
¡û
>WENV183661503
ORJL010114677
[ORJL] groundwater metagenome; groundwater
71406
71480
+
Gly
CCC
[ENA]
¢þ
>WENV183663232
ORJL010266465
[ORJL] groundwater metagenome; groundwater
3961
4035
+
Gly
CCC
[ENA]
¢þ
>WENV183670992
ORJL011014801
[ORJL] groundwater metagenome; groundwater
422
348
-
Gly
CCC
[ENA]
¢þ
>WENV183672025
ORJL011127398
[ORJL] groundwater metagenome; groundwater
111
185
+
Gly
CCC
[ENA]
¢þ
>WENV183674803
ORJL011432857
[ORJL] groundwater metagenome; groundwater
28166
28240
+
Gly
CCC
[ENA]
¢þ
>WENV183676101
ORJL011587805
[ORJL] groundwater metagenome; groundwater
2541
2467
-
Gly
CCC
[ENA]
¢þ
>WENV183676780
ORJL011668276
[ORJL] groundwater metagenome; groundwater
3548
3474
-
Gly
CCC
[ENA]
¢þ
>WENV183682816
ORMF010493525
[ORMF] groundwater metagenome; groundwater
768
694
-
Gly
CCC
[ENA]
¢þ
>WENV170017062
BARS01045071
[BARS] marine sediment metagenome; marine subsurface sediment at 0.8 meters below seafloor (mbsf), off the Shimokita Peninsula
506
578
+
Gly
CCC
[ENA]
¢þ
>WENV170017225
BART01002330
[BART] marine sediment metagenome; marine subsurface sediment at 5.1 meters below seafloor (mbsf), off the Shimokita Peninsula
125
196
+
Gly
CCC
[ENA]
¢þ
>WENV170017843
BARU01032110
[BARU] marine sediment metagenome; marine subsurface sediment at 18.6 meters below seafloor (mbsf), off the Shimokita Peninsula
659
733
+
Gly
CCC
[ENA]
¢þ
>WENV170210247
CEPV01166981
[CEPV] marine metagenome genome assembly TARA_039_MES_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
748
674
-
Gly
CCC
[ENA]
¢þ
>WENV170224522
CEQE01060325
[CEQE] marine metagenome genome assembly TARA_037_MES_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
137
211
+
Gly
CCC
[ENA]
¢þ
>WENV170648000
JRER01002155
[JRER] marine sediment metagenome; clay from marine sediments 136 meters below sea floor depth collected from drilling site U1352C
5864
5790
-
Gly
CCC
[ENA]
¢þ
>WENV170717573
LSQX01041079
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
7404
7330
-
Gly
CCC
[ENA]
¢þ
>C181003132
AP017649
Chloroflexota
Dehalococcoides mccartyi UCH-ATV1 [AP017649]
693286
693360
+
Gly
CCC
-
¡û
>W1810107598
PHFD01000105
Chloroflexota
Dehalococcoides mccartyi H1-3-2.001 [PHFD]
7147
7073
-
Gly
CCC
[ENA]
¡û
>W1810266194
PQVQ01000023
Chloroflexota
Dehalococcoides mccartyi GEO12 [PQVQ]
445274
445348
+
Gly
CCC
[ENA]
¡û
>C151003206
AP014722
Chloroflexota
Dehalococcoides sp. UCH007 [AP014722]
694218
694292
+
Gly
CCC
[Ensembl]
¡û
>C151015123
CP006949
Chloroflexota
Dehalococcoides mccartyi CG1 [CP006949]
733391
733465
+
Gly
CCC
[Ensembl]
¡û
>C151015170
CP006950
Chloroflexota
Dehalococcoides mccartyi CG4 [CP006950]
774682
774756
+
Gly
CCC
[Ensembl]
¡û
>C10105253
CP001827
Chloroflexota
Dehalococcoides mccartyi VS [CP001827]
705963
706037
+
Gly
CCC
[Ensembl]
¡û
>C131012584
CP004080
Chloroflexota
Dehalococcoides mccartyi BTF08 [CP004080]
728493
728567
+
Gly
CCC
[Ensembl]
¡û
>W1610521055
JGYD01000026
Chloroflexota
Dehalococcoides mccartyi [JGYD]
26453
26379
-
Gly
CCC
[ENA]
¡û
>W1611032003
LZFJ01000001
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
437842
437768
-
Gly
CCC
[ENA]
¡û
>W1710617305
JGYD01000026
Chloroflexota
Dehalococcoides mccartyi [JGYD]
26453
26379
-
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK