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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.420471 (67 seq.)
>W131184600
ARTA01000022
Bacillota
Faecalispora sporosphaeroides DSM 1294 [ARTA]
427760
427687
-
Gly
TCC
[ENA]
¡û
>C171109180
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
516233
516306
+
Gly
TCC
-
¡û
>C171109209
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
1417150
1417223
+
Gly
TCC
-
¡û
>C171109238
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
1759527
1759600
+
Gly
TCC
-
¡û
>C171109271
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
4095737
4095664
-
Gly
TCC
-
¡û
>C171109293
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
4087817
4087744
-
Gly
TCC
-
¡û
>WENV180146568
OAUF01000899
[OAUF] human gut metagenome; faeces
3420
3493
+
Gly
TCC
[ENA]
¢þ
>WENV180205385
OBAH01020390
[OBAH] human gut metagenome; human gut
1386
1459
+
Gly
TCC
[ENA]
¢þ
>WENV180211738
OBAM01018293
[OBAM] human gut metagenome; human gut
80
7
-
Gly
TCC
[ENA]
¢þ
>WENV180298001
OBJA01137606
[OBJA] soil metagenome; sediment, water from around vicinity
417
344
-
Gly
TCC
[ENA]
¢þ
>WENV180413633
OBVB01026520
[OBVB] human gut metagenome; faeces
313
240
-
Gly
TCC
[ENA]
¢þ
>WENV180438865
OBWS01001752
[OBWS] human gut metagenome; faeces
5257
5184
-
Gly
TCC
[ENA]
¢þ
>WENV180441857
OBWW01002222
[OBWW] human gut metagenome; faeces
606
679
+
Gly
TCC
[ENA]
¢þ
>WENV180489808
OBZS01025197
[OBZS] human gut metagenome; faeces
23
96
+
Gly
TCC
[ENA]
¢þ
>WENV180490299
OBZU01000065
[OBZU] human gut metagenome; faeces
39297
39224
-
Gly
TCC
[ENA]
¢þ
>WENV180498791
OCAG01002115
[OCAG] human gut metagenome; faeces
270
197
-
Gly
TCC
[ENA]
¢þ
>WENV180655227
OCVV010416023
[OCVV] gut metagenome; gut
197
270
+
Gly
TCC
[ENA]
¢þ
>WENV180655230
OCVV010416023
[OCVV] gut metagenome; gut
197
270
+
Gly
TCC
[ENA]
¢þ
>WENV180663820
OCVV011134950
[OCVV] gut metagenome; gut
2769
2839
+
Gly
TCC
[ENA]
¢þ
>WENV180663823
OCVV011134950
[OCVV] gut metagenome; gut
2769
2839
+
Gly
TCC
[ENA]
¢þ
>WENV180670291
OCVV011298763
[OCVV] gut metagenome; gut
3921
3848
-
Gly
TCC
[ENA]
¢þ
>WENV180670294
OCVV011298763
[OCVV] gut metagenome; gut
3921
3848
-
Gly
TCC
[ENA]
¢þ
>WENV180671061
OCVV011311112
[OCVV] gut metagenome; gut
662
589
-
Gly
TCC
[ENA]
¢þ
>WENV180671064
OCVV011311112
[OCVV] gut metagenome; gut
662
589
-
Gly
TCC
[ENA]
¢þ
>WENV181026413
ODXC01001112
[ODXC] human metagenome; G_DNA_Stool
5522
5449
-
Gly
TCC
[ENA]
¢þ
>WENV181220116
OFCQ01000086
[OFCQ] metagenome; Human gut stool
56676
56603
-
Gly
TCC
[ENA]
¢þ
>WENV181225786
OFDJ01000280
[OFDJ] metagenome; Human gut stool
987
914
-
Gly
TCC
[ENA]
¢þ
>WENV181231717
OFEK01054581
[OFEK] activated sludge metagenome; Anaerobic digester
607
680
+
Gly
TCC
[ENA]
¢þ
>WENV181249648
OFFM01042815
[OFFM] mouse gut metagenome; faeces
107
34
-
Gly
TCC
[ENA]
¢þ
>WENV181266395
OFGB01068302
[OFGB] mouse gut metagenome; faeces
205
132
-
Gly
TCC
[ENA]
¢þ
>WENV181544175
OGIF01018047
[OGIF] metagenome; Human gut stool
185
258
+
Gly
TCC
[ENA]
¢þ
>WENV181547131
OGII01005240
[OGII] metagenome; Human gut stool
677
604
-
Gly
TCC
[ENA]
¢þ
>WENV181779621
OGRI01011088
[OGRI] human gut metagenome; faeces
74
1
-
Gly
TCC
[ENA]
¢þ
>WENV181897856
OGXT01001076
[OGXT] human gut metagenome; faeces
8714
8787
+
Gly
TCC
[ENA]
¢þ
>WENV181923408
OGYL01000393
[OGYL] human gut metagenome; faeces
31233
31306
+
Gly
TCC
[ENA]
¢þ
>WENV181941544
OGYY01004461
[OGYY] human gut metagenome; faeces
4871
4944
+
Gly
TCC
[ENA]
¢þ
>WENV182085052
OHGR01001301
[OHGR] human gut metagenome; feces
5351
5424
+
Gly
TCC
[ENA]
¢þ
>WENV182151540
OHLJ01014483
[OHLJ] human gut metagenome; feces
795
722
-
Gly
TCC
[ENA]
¢þ
>WENV182325388
OHYS01007172
[OHYS] human gut metagenome; feces
208
281
+
Gly
TCC
[ENA]
¢þ
>WENV182505511
OIUX01018424
[OIUX] human gut metagenome; human gut
297
224
-
Gly
TCC
[ENA]
¢þ
>W141259074
CBYL010000064
Bacillota
Faecalispora jeddahensis JCD [CBYL]
7840
7767
-
Gly
TCC
[ENA]
¡û
>WENV182704783
OJOU01019138
[OJOU] human gut metagenome; stool sample
234
307
+
Gly
TCC
[ENA]
¢þ
>WENV183064430
OLIH01006789
[OLIH] metagenome; faeces
453
526
+
Gly
TCC
[ENA]
¢þ
>WENV183368695
OLXR01050555
[OLXR] human gut metagenome; feces
412
485
+
Gly
TCC
[ENA]
¢þ
>WENV183371918
OLXW01000137
[OLXW] human gut metagenome; feces
15394
15321
-
Gly
TCC
[ENA]
¢þ
>WENV183456548
OMDK01004228
[OMDK] human gut metagenome; feces
1942
1869
-
Gly
TCC
[ENA]
¢þ
>WENV183601732
OODJ01003785
[OODJ] human gut metagenome; human gut
6966
7039
+
Gly
TCC
[ENA]
¢þ
>WENV183757377
PPYE01158111
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
4158
4231
+
Gly
TCC
[ENA]
¢þ
>WENV170563976
CZCB01040186
[CZCB] anaerobic digester metagenome; anaerobic digester
514
587
+
Gly
TCC
[ENA]
¢þ
>WENV170564090
CZCB01049125
[CZCB] anaerobic digester metagenome; anaerobic digester
862
789
-
Gly
TCC
[ENA]
¢þ
>WENV170654881
JRYL01062355
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
539
612
+
Gly
TCC
[ENA]
¢þ
>WENV170690267
LFRM01332987
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
53326
53253
-
Gly
TCC
[ENA]
¢þ
>WENV170722921
LSQX01248638
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
115
188
+
Gly
TCC
[ENA]
¢þ
>WENV170725092
LSQX01330198
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1248
1175
-
Gly
TCC
[ENA]
¢þ
>WENV170725580
LSQX01348344
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
8816
8743
-
Gly
TCC
[ENA]
¢þ
>W141561144
JHYF01000002
Bacillota
Alkaliphilus transvaalensis ATCC 700919 [JHYF]
660
733
+
Gly
TCC
[ENA]
¡û
>W141561167
JHYF01000010
Bacillota
Alkaliphilus transvaalensis ATCC 700919 [JHYF]
90089
90016
-
Gly
TCC
[ENA]
¡û
>W1910483195
FXLN01000003
Bacillota
Clostridium merdae Marseille-P2953 [FXLN]
603520
603447
-
Gly
TCC
[ENA]
¡û
>W1911503136
OEQH01000004
Bacillota
Clostridium minihomine Marseille-P4642 [OEQH]
198881
198808
-
Gly
TCC
[ENA]
¡û
>W10115445
ADKM01000213
Bacillota
Ruminococcus albus 8 [ADKM]
473657
473587
-
Gly
TCC
[ENA]
¡û
>W11118980
ADKM02000040
Bacillota
Ruminococcus albus 8 [ADKM]
2210
2280
+
Gly
TCC
[ENA]
¡û
>C161087061
CP015400
Bacillota
Hungateiclostridiaceae bacterium KB18 [CP015400]
2075673
2075600
-
Gly
TCC
[Ensembl]
¡û
>W121081469
AKFU01000013
Bacillota
Clostridium sp. MSTE9 [AKFU]
22102
22029
-
Gly
TCC
[ENA]
¡û
>W1610605952
LFSK01000172
Bacillota
Clostridiaceae bacterium DTU059 [LFSK]
53326
53253
-
Gly
TCC
[ENA]
¡û
>W1710510105
FMXS01000012
Bacillota
Ruminococcaceae bacterium FB2012 [FMXS]
23720
23647
-
Gly
TCC
[ENA]
¡û
>W1710588765
FQZP01000061
Bacillota
Thermoclostridium caenicola [FQZP]
3961
4034
+
Gly
TCC
[ENA]
¡û
>W1710727239
LFSK01000172
Bacillota
Clostridiaceae bacterium DTU059 [LFSK]
53326
53253
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK