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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.420684 (16 seq.)
>A171000103
AP011952
Euryarchaeota
Methanothermobacter sp. CaT2 [AP011952]
1278464
1278535
+
Val
TAC
-
¡û
>A171000104
AP011952
Euryarchaeota
Methanothermobacter sp. CaT2 [AP011952]
1278560
1278632
+
Val
CAC
-
¡û
>A171000885
CP001710
Euryarchaeota
Methanothermobacter marburgensis str. Marburg [CP001710]
17749
17820
+
Val
TAC
-
¡û
>A171000886
CP001710
Euryarchaeota
Methanothermobacter marburgensis str. Marburg [CP001710]
17844
17916
+
Val
CAC
-
¡û
>A171007715
LT608329
Euryarchaeota
Methanothermobacter wolfeii [LT608329]
1660776
1660847
+
Val
TAC
-
¡û
>A171007716
LT608329
Euryarchaeota
Methanothermobacter wolfeii [LT608329]
1660870
1660942
+
Val
CAC
-
¡û
>At1666
AE000666
Euryarchaeota
Methanothermobacter thermautotrophicus str. Delta H [AE000666]
1295989
1296060
+
Val
TAC
[Ensembl]
¡û
>WENV170676679
LDZS01001897
[LDZS] terrestrial metagenome; oil reservoir sample K3
79038
78967
-
Val
TAC
[ENA]
¢þ
>WENV170676680
LDZS01001897
[LDZS] terrestrial metagenome; oil reservoir sample K3
78942
78870
-
Val
CAC
[ENA]
¢þ
>WENV170690953
LFRM01372706
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1137
1066
-
Val
TAC
[ENA]
¢þ
>WENV170690954
LFRM01372706
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1043
971
-
Val
CAC
[ENA]
¢þ
>WENV170725756
LSQX01355291
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1791
1719
-
Val
CAC
[ENA]
¢þ
>W1910574971
JQKN01000015
Euryarchaeota
Methanobacterium arcticum M2 [JQKN]
17528
17599
+
Val
TAC
[ENA]
¡û
>W1910635126
LMVM01000012
Euryarchaeota
Methanobacterium bryantii M.o.H. [LMVM]
81489
81560
+
Val
TAC
[ENA]
¡û
>W1911722806
QREL01000002
Euryarchaeota
Methanothermobacter defluvii DSM 7466 [QREL]
305280
305209
-
Val
TAC
[ENA]
¡û
>W1911722807
QREL01000002
Euryarchaeota
Methanothermobacter defluvii DSM 7466 [QREL]
305184
305112
-
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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