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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.420962 (15 seq.)
>W131158382
AQUA01000001
Actinomycetota
actinobacterium SCGC AAA278-O22 [AQUA]
84299
84227
-
Val
TAC
[ENA]
¡û
>WENV181367386
OFQB01000128
[OFQB] freshwater metagenome; Freshwater Lake
1658
1586
-
Val
TAC
[ENA]
¢þ
>WENV181384544
OFRI01002448
[OFRI] wastewater metagenome; Exp Tend VB 90WW
2378
2306
-
Val
TAC
[ENA]
¢þ
>WENV181854339
OGWK01000559
[OGWK] freshwater metagenome; freshwater
701
773
+
Val
TAC
[ENA]
¢þ
>WENV170570443
FLOH01000004
[FLOH] marine metagenome; water
302961
302887
-
Val
TAC
[ENA]
¢þ
>WENV170572791
FLOH01001299
[FLOH] marine metagenome; water
31925
31851
-
Val
TAC
[ENA]
¢þ
>C181020873
CP016770
Actinomycetota
Candidatus Planktophila dulcis [CP016770]
284712
284784
+
Val
TAC
-
¡û
>C181020947
CP016772
Actinomycetota
Candidatus Planktophila dulcis [CP016772]
280891
280963
+
Val
TAC
-
¡û
>C181021021
CP016774
Actinomycetota
Candidatus Planktophila versatilis [CP016774]
253923
253995
+
Val
TAC
-
¡û
>C181021057
CP016775
Actinomycetota
Candidatus Planktophila versatilis [CP016775]
259256
259328
+
Val
TAC
-
¡û
>C181021130
CP016777
Actinomycetota
Candidatus Planktophila dulcis [CP016777]
281925
281997
+
Val
TAC
-
¡û
>C181021169
CP016778
Actinomycetota
Candidatus Planktophila versatilis [CP016778]
259497
259569
+
Val
TAC
-
¡û
>C181021281
CP016781
Actinomycetota
Candidatus Planktophila versatilis [CP016781]
268857
268929
+
Val
TAC
-
¡û
>W1610625835
LIBF01000040
Actinomycetota
Actinobacteria bacterium BACL4 MAG-121001-bin59 [LIBF]
141
69
-
Val
TAC
[ENA]
¡û
>W1710756962
LIBF01000040
Actinomycetota
Actinobacteria bacterium BACL4 MAG-121001-bin59 [LIBF]
141
69
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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