This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.421039 (74 seq.)
>W1710867847
LMIP01000015
Actinomycetota
Nocardioides sp. Root79 [LMIP]
292038
291965
-
Gly
TCC
[ENA]
¡û
>W1710869894
LMKB01000006
Actinomycetota
Frigoribacterium sp. Leaf8 [LMKB]
191885
191956
+
Gly
TCC
[ENA]
¡û
>W1710876143
LMOZ01000001
Actinomycetota
Leifsonia sp. Leaf336 [LMOZ]
1818136
1818209
+
Gly
TCC
[ENA]
¡û
>W1711050089
LRRG01000110
Actinomycetota
Rhodococcus opacus [LRRG]
9289
9216
-
Gly
TCC
[ENA]
¡û
>W1711091486
LTCZ01000421
Actinomycetota
Rhodococcus sp. LB1 [LTCZ]
16555
16628
+
Gly
TCC
[ENA]
¡û
>W1711179571
LWHT01000001
Actinomycetota
Prescottella equi [LWHT]
542103
542176
+
Gly
TCC
[ENA]
¡û
>W1711192311
LWTQ01000004
Actinomycetota
Prescottella equi [LWTQ]
221343
221416
+
Gly
TCC
[ENA]
¡û
>W1711192376
LWTR01000055
Actinomycetota
Prescottella equi [LWTR]
14818
14745
-
Gly
TCC
[ENA]
¡û
>W1711192443
LWTS01000011
Actinomycetota
Prescottella equi [LWTS]
12139
12212
+
Gly
TCC
[ENA]
¡û
>W1711192555
LWTV01000001
Actinomycetota
Prescottella equi [LWTV]
479970
480043
+
Gly
TCC
[ENA]
¡û
>W131229239
AUGQ01000018
Actinomycetota
Microbacterium gubbeenense DSM 15944 [AUGQ]
24299
24372
+
Gly
TCC
[ENA]
¡û
>W1711357462
MDHH01000006
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHH]
35854
35781
-
Gly
TCC
[ENA]
¡û
>W1711357566
MDHK01000020
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHK]
59105
59178
+
Gly
TCC
[ENA]
¡û
>W1711961739
NCSR01000004
Actinomycetota
Leifsonia sp. NCR5 [NCSR]
81538
81609
+
Gly
TCC
[ENA]
¡û
>WENV180017024
FSWJ01000567
[FSWJ] metagenome; soil
51943
52015
+
Gly
TCC
[ENA]
¢þ
>WENV180024014
FTIF01008920
[FTIF] metagenome; soil
98
26
-
Gly
TCC
[ENA]
¢þ
>WENV180024059
FTIF01018831
[FTIF] metagenome; soil
197
269
+
Gly
TCC
[ENA]
¢þ
>WENV180028959
FTJI01000231
[FTJI] metagenome; soil
4744
4815
+
Gly
TCC
[ENA]
¢þ
>WENV180029290
FTJI01414193
[FTJI] metagenome; soil
593
522
-
Gly
TCC
[ENA]
¢þ
>WENV180029329
FTJI01707388
[FTJI] metagenome; soil
1774
1701
-
Gly
TCC
[ENA]
¢þ
>W141091855
AUZK01000012
Actinomycetota
Rhodococcus erythropolis DN1 [AUZK]
120659
120732
+
Gly
TCC
[ENA]
¡û
>W141212793
AZQZ01000045
Actinomycetota
Clavibacter michiganensis michiganensis LMG 26808 [AZQZ]
587305
587378
+
Gly
TCC
[ENA]
¡û
>W141238667
BBLL01000179
Actinomycetota
Rhodococcus erythropolis [BBLL]
146588
146661
+
Gly
TCC
[ENA]
¡û
>WENV170228832
CEQG01046195
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2643
2716
+
Gly
TCC
[ENA]
¢þ
>WENV170248267
CEQQ01113280
[CEQQ] marine metagenome genome assembly TARA_076_DCM_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
6430
6503
+
Gly
TCC
[ENA]
¢þ
>WENV170263798
CERC01087024
[CERC] marine metagenome genome assembly TARA_070_MES_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
484
411
-
Gly
TCC
[ENA]
¢þ
>WENV170379485
CETV01132337
[CETV] marine metagenome genome assembly TARA_133_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
20042
20115
+
Gly
TCC
[ENA]
¢þ
>C181033515
CP018863
Actinomycetota
Arthrobacter crystallopoietes DSM 20117 [CP018863]
4253989
4253918
-
Gly
TCC
-
¡û
>C181169631
CP028913
Actinomycetota
Agromyces badenianii MF30-A [CP028913]
1785234
1785307
+
Gly
TCC
-
¡û
>C191134677
CP035103
Actinomycetota
Kocuria rosea ATCC 186 [CP035103]
1709327
1709256
-
Gly
TCC
-
¡û
>C191210265
LR134391
Actinomycetota
Kocuria rosea NCTC7514 [LR134391]
2604661
2604732
+
Gly
TCC
-
¡û
>W1910500489
FXZH01000025
Actinomycetota
Brevibacterium sp. 239c [FXZH]
53120
53047
-
Gly
TCC
[ENA]
¡û
>W1910500675
FXZM01000012
Actinomycetota
Brevibacterium jeotgali SJ5-8 [FXZM]
78107
78035
-
Gly
TCC
[ENA]
¡û
>W1910637669
LQWU01000002
Actinomycetota
Rhodococcus erythropolis B7g [LQWU]
57944
57871
-
Gly
TCC
[ENA]
¡û
>W1910792493
MRAW01000014
Actinomycetota
Leucobacter sp. OLJS4 [MRAW]
104651
104580
-
Gly
TCC
[ENA]
¡û
>W1910804092
MTCJ01000069
Actinomycetota
Leucobacter sp. OAMLP11 [MTCJ]
472226
472155
-
Gly
TCC
[ENA]
¡û
>W1910839692
MZMM01000001
Actinomycetota
Clavibacter sepedonicus subsp. sepedonicus CFIA-Cs3N [MZMM]
576890
576817
-
Gly
TCC
[ENA]
¡û
>W1910839735
MZMN01000003
Actinomycetota
Clavibacter sepedonicus subsp. sepedonicus CFIA-CsR14 [MZMN]
192686
192613
-
Gly
TCC
[ENA]
¡û
>W1911239679
NSDY01000001
Actinomycetota
Rhodococcus sp. ACPA4 [NSDY]
98377
98304
-
Gly
TCC
[ENA]
¡û
>W1911748154
QWDZ01000094
Actinomycetota
Clavibacter michiganensis CFBP 1195 [QWDZ]
8162
8235
+
Gly
TCC
[ENA]
¡û
>W1911798598
QYRT01000044
Actinomycetota
Subtercola vilae DB165 [QYRT]
12142
12070
-
Gly
TCC
[ENA]
¡û
>W1810121378
PHUH01000001
Actinomycetota
Microcella sp. HL-107 [PHUH]
231227
231156
-
Gly
TCC
[ENA]
¡û
>W1810167977
PJIX01000002
Actinomycetota
Arthrobacter sp. 08Y14 [PJIX]
1111908
1111979
+
Gly
TCC
[ENA]
¡û
>W1810169220
PJJX01000002
Actinomycetota
Terrimesophilobacter mesophilus CGMCC1.10440 [PJJX]
696899
696971
+
Gly
TCC
[ENA]
¡û
>W1810282060
PSXY01000001
Actinomycetota
Clavibacter michiganensis AY1B3 [PSXY]
193015
192944
-
Gly
TCC
[ENA]
¡û
>W1810584774
QFBL01000007
Actinomycetota
Kocuria rosea ATCC 49321 [QFBL]
41771
41842
+
Gly
TCC
[ENA]
¡û
>W1810743437
QORO01000001
Actinomycetota
Microbacterium sorbitolivorans C1.15228 [QORO]
460076
460149
+
Gly
TCC
[ENA]
¡û
>W1810861491
QTTX01000002
Actinomycetota
Microbacterium sp. 1294 [QTTX]
1227568
1227641
+
Gly
TCC
[ENA]
¡û
>W1810886029
QUNT01000001
Actinomycetota
Agromyces sp. OV568 [QUNT]
677474
677401
-
Gly
TCC
[ENA]
¡û
>SRA1014394
SRR023845.118773
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
193
122
-
Gly
TCC
[SRA]
>C151005056
CP003949
Actinomycetota
Rhodococcus opacus PD630 [CP003949]
5666959
5667032
+
Gly
TCC
[Ensembl]
¡û
>W1510089405
CECE01000006
Actinomycetota
Arthrobacter koreensis 5J12A [CECE]
74696
74623
-
Gly
TCC
[ENA]
¡û
>W10116541
ADNW01000021
Actinomycetota
Prescottella equi ATCC 33707 [ADNW]
100184
100257
+
Gly
TCC
[ENA]
¡û
>W11121223
ADNW02000014
Actinomycetota
Prescottella equi ATCC 33707 [ADNW]
136624
136551
-
Gly
TCC
[ENA]
¡û
>W1511432353
JUGL01000012
Actinomycetota
Herbiconiux sp. YR403 [JUGL]
448824
448751
-
Gly
TCC
[ENA]
¡û
>W1511535424
JYOP01000002
Actinomycetota
Rhodococcus sp. AD45 [JYOP]
104718
104645
-
Gly
TCC
[ENA]
¡û
>W11177984
AGCF01000002
Actinomycetota
Rhodococcus erythropolis XP [AGCF]
2152265
2152338
+
Gly
TCC
[ENA]
¡û
>C161005729
CP007255
Actinomycetota
Rhodococcus erythropolis R138 [CP007255]
2987672
2987599
-
Gly
TCC
[Ensembl]
¡û
>W121086853
AKKP01000035
Actinomycetota
Rhodococcus sp. JVH1 [AKKP]
30083
30156
+
Gly
TCC
[ENA]
¡û
>W1610050551
BBFZ01000163
Actinomycetota
Rhodococcus sp. JCM 3009 [BBFZ]
718
645
-
Gly
TCC
[ENA]
¡û
>W1610068589
BCRL01000032
Actinomycetota
Prescottella equi NBRC 101255 = C 7 [BCRL]
46112
46185
+
Gly
TCC
[ENA]
¡û
>W1610620607
LHOZ01000064
Actinomycetota
Frigoribacterium sp. RIT-PI-h [LHOZ]
1110
1039
-
Gly
TCC
[ENA]
¡û
>W1610730193
LMIP01000015
Actinomycetota
Nocardioides sp. Root79 [LMIP]
292038
291965
-
Gly
TCC
[ENA]
¡û
>W1610732240
LMKB01000006
Actinomycetota
Frigoribacterium sp. Leaf8 [LMKB]
191885
191956
+
Gly
TCC
[ENA]
¡û
>W1610738489
LMOZ01000001
Actinomycetota
Leifsonia sp. Leaf336 [LMOZ]
1818136
1818209
+
Gly
TCC
[ENA]
¡û
>W1610890845
LRQY01000037
Actinomycetota
Prescottella equi [LRQY]
178970
179043
+
Gly
TCC
[ENA]
¡û
>W1610891218
LRRG01000110
Actinomycetota
Rhodococcus opacus [LRRG]
9289
9216
-
Gly
TCC
[ENA]
¡û
>W1610925630
LTCZ01000421
Actinomycetota
Rhodococcus sp. LB1 [LTCZ]
16555
16628
+
Gly
TCC
[ENA]
¡û
>W1710046950
BBFZ01000163
Actinomycetota
Rhodococcus sp. JCM 3009 [BBFZ]
718
645
-
Gly
TCC
[ENA]
¡û
>W1710065962
BCRL01000032
Actinomycetota
Prescottella equi NBRC 101255 = C 7 [BCRL]
46112
46185
+
Gly
TCC
[ENA]
¡û
>W1710072137
BCXD01000010
Actinomycetota
Rhodococcus rhodnii NBRC 100604 [BCXD]
103620
103693
+
Gly
TCC
[ENA]
¡û
>W1710532041
FNPZ01000003
Actinomycetota
Herbiconiux ginsengi [FNPZ]
400938
400867
-
Gly
TCC
[ENA]
¡û
>W1710569395
FOUK01000001
Actinomycetota
Pimelobacter simplex [FOUK]
1249405
1249478
+
Gly
TCC
[ENA]
¡û
>W1710748301
LHOZ01000064
Actinomycetota
Frigoribacterium sp. RIT-PI-h [LHOZ]
1110
1039
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK