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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.421071 (18 seq.)
>A171004637
CP009503
Euryarchaeota
Methanosarcina sp. WWM596 [CP009503]
2798324
2798251
-
Thr
CGT
-
¡û
>A171004679
CP009504
Euryarchaeota
Methanosarcina sp. WH1 [CP009504]
3359719
3359792
+
Thr
CGT
-
¡û
>A171004771
CP009506
Euryarchaeota
Methanosarcina siciliae T4/M [CP009506]
627157
627229
+
Thr
CGT
-
¡û
>A171004824
CP009507
Euryarchaeota
Methanosarcina siciliae HI350 [CP009507]
604444
604515
+
Thr
CGT
-
¡û
>A171004877
CP009508
Euryarchaeota
Methanosarcina siciliae C2J [CP009508]
637876
637948
+
Thr
CGT
-
¡û
>WENV180346507
OBLN01129339
[OBLN] sediment metagenome; sediment
252
180
-
Thr
CGT
[ENA]
¢þ
>At1216
CP000559
Euryarchaeota
Methanocorpusculum labreanum Z [CP000559]
359486
359415
-
Thr
CGT
[Ensembl]
¡û
>WENV170725610
LSQX01349485
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
732
661
-
Thr
CGT
[ENA]
¢þ
>W1910569444
JJOV01000041
Euryarchaeota
Methanosarcina sp. 2.H.A.1B.4 [JJOV]
66588
66660
+
Thr
CGT
[ENA]
¡û
>W1910569515
JJOW01000230
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.15 [JJOW]
2851
2779
-
Thr
CGT
[ENA]
¡û
>W1910569554
JJOX01000073
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.3 [JJOX]
58793
58721
-
Thr
CGT
[ENA]
¡û
>W1910569594
JJOY01000014
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.6 [JJOY]
58795
58723
-
Thr
CGT
[ENA]
¡û
>W1910569638
JJOZ01000016
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.8 [JJOZ]
286872
286944
+
Thr
CGT
[ENA]
¡û
>W1910571587
JJQL01000041
Euryarchaeota
Methanosarcina sp. 1.H.A.2.2 [JJQL]
1255
1183
-
Thr
CGT
[ENA]
¡û
>W1910572272
JJQY01000095
Euryarchaeota
Methanosarcina sp. 1.H.T.1A.1 [JJQY]
84003
84075
+
Thr
CGT
[ENA]
¡û
>W1910635221
LMVO01000034
Euryarchaeota
Methanocorpusculum parvum XII [LMVO]
58456
58384
-
Thr
CGT
[ENA]
¡û
>W1610024394
AUMX01000001
Euryarchaeota
Methanocorpusculum bavaricum DSM 4179 [AUMX]
42674
42746
+
Thr
CGT
[ENA]
¡û
>W1610946050
LUYI01000218
Euryarchaeota
Methanomicrobiales archaeon Methan_05 [LUYI]
6255
6327
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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